LOC120559512


Basic Information

Item Value
gene id LOC120559512
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16680581 ~ 16683534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639302.1
AATCGTGATAGGAATACAGTAGTGCCACTGTTTTGGGCGTCTGTCATTAAAACTCAGCTGCTGCACTGAATGTCTGGCTGTCACTTAAaaactcattagccaatggggacgcacctcTGAAAAGACCCGCCCATGCAAGAGGTGTGTCAGGCAGTGCAATCAAGGGAGCTGGGATCATGACCGCAAGGGTGAAAGAGTCTGATCAGtgcagaaagaagaaaagggaactgtaaacaaagttGTACGTTTTACTTTTTGCCTTAGtgagtgatttttgtttgatacttaaGAAGTGTTGTTTGAACATATTGGCACAAATCTAATTCCACAATTCGGTGGCTGTCAAATCACATCTGCCAGGAGAGGTGATTAACGTTACAGTAAagtaaaatgtaggctactatTAACACAGGTGAAGAAACACactgggagaagaggaaaatacAACCAGGAAAGAGCAGTCAAAGGAAACCATCAGTAATTTGGACATGatGGCTGTAACTTCTCGACCAGAACTGTTTGATTTTCACGGAGTCTGCATGACTCACTTTTACACAGACAACTGGGAGAACATGCAAAACTTTCAGGCCAGGCCAGATGATATACTTATTGCAACATACCTCAAAGCAGGAACCTACATCCTTGAACTGCTGTATTTTGGTCAGACAGAGCGTCAGACATCCATCCCTATTTATAACAGGGTGCCTATGTTGGAGGCCGCCTTCCCTTCTCTGCAGCCAGGTTGAATTAACTATGGTATATACTCACCATATTACATATGTCACAAATATGCAAACACTTTTATGACGTGGTGGTAATTCTCAGTCTTTTACTTAAATCAGTAAACTAAATTGTTCACATGGATTCACATGTCATTCTgttatattgtatattatacagtatgtaaaggCTGTGTGCCAGGGAGTGTGCAATAAATTGAAGGAGCTGTACCCAAAATactgagaagaaaaacaaacagcgGGCAAGGATGcctccacacagctctcacaGATCGTTTCCCAATACTTGAAAtacatacgttttttttttttatggccaCATGCACTGACATGCACATGAGGCCAGAACGGCATAATaacagagaaactcagattaaaacacacacaaagggagTGTTACtttattctctgctcaggacgccattaACTCCACCATATCTTTTCATggcaaatatttgtttattgctatattaatgttctgaatatgTACAGCCTCTTTAATAACAATTGGTGCATTTATCATCATCATGGTATCTGAACGTTTAACAATATCATATTTTTAGTTATTTCAAGATACAATGAGTAACataattcaatatttttcaaAGGCTATCTAAACATAATAAATGTATAGCTGTTTGGGTCCCAAAAACACTCCATCCGCTACGGACAGGCATGTTTTGAACGGGCACTGTTTTAGCTATGTGAAATAGCCTACATAAAAATGAATACACTAATAATAAACCGcaataataaacagcaataataataatactagtATAATAGTTATAAATTtctcatttttatttgaatCCATACATGAAATGCAGCAAGGAATACAAGAACAAAAGTTCAATGAGCAAAGTAAACTAATGAATCTAACACTGTACTTCTGCACTGTGGCTACAGACTAGAGGCGGcacattgattgattgattttctaTGGCACGTACTGCGTTTATGGAGGGGACAACACTATGGGTGCTGGAGGTACCACCCTGGTCATGAAATAAAAGAGGAAACAGCAAGTACTGATACAGTGAAATCTTACGGGTTCATTGGAATGTCGACAACAACACAAGGCCATTGTACTGTAAATACTAACCAAGTCAAGCATCTCAAATCACTGGGAGATACTGGAAGTCACCCTGAGGTAACCGAAAACAAGTCATGGTATGGCTCTCATCAGGAACAACAATAACATGTCAGTAATCATTTTGTTAGAACAAGGCTCAGTTTTTAAAAAACAGAATACTTGTAATATCATGTTGGAACAAAACTTTTCAAATGTAAGGAGGAAACCACTGGACCAGGATCACCAAACAgattcaagttaattaatagaCTAAATATGGTTACATGTGaagtgttttgtgtttctttccGATACCTTTGTCGTCATTTAAtgacagaataaaaaaatgtaaatcccGCA
>XR_005639303.1
TTATAAATCGTGATAGGAATACAGTAGTGCCACTGTTTTGGGCGTCTGTCATTAAAACTCAGCTGCTGCACTGAATGTCTGGCTGTCACTTAAaaactcattagccaatggggacgcacctcTGAAAAGACCCGCCCATGCAAGAGGTGTGTCAGGCAGTGCAATCAAGGGAGCTGGGATCATGACCGCAAGGGTGAAAGAGTCTGATCAGtgcagaaagaagaaaagggaactgtaaacaaagttGTACGTTTTACTTTTTGCCTTAGTGAAGAAACACactgggagaagaggaaaatacAACCAGGAAAGAGCAGTCAAAGGAAACCATCAGTAATTTGGACATGatGGCTGTAACTTCTCGACCAGAACTGTTTGATTTTCACGGAGTCTGCATGACTCACTTTTACACAGACAACTGGGAGAACATGCAAAACTTTCAGGCCAGGCCAGATGATATACTTATTGCAACATACCTCAAAGCAGGAACCTACATCCTTGAACTGCTGTATTTTGGTCAGACAGAGCGTCAGACATCCATCCCTATTTATAACAGGGTGCCTATGTTGGAGGCCGCCTTCCCTTCTCTGCAGCCAGGTTGAATTAACTATGGTATATACTCACCATATTACATATGTCACAAATATGCAAACACTTTTATGACGTGGTGGTAATTCTCAGTCTTTTACTTAAATCAGTAAACTAAATTGTTCACATGGATTCACATGTCATTCTgttatattgtatattatacagtatgtaaaggCTGTGTGCCAGGGAGTGTGCAATAAATTGAAGGAGCTGTACCCAAAATactgagaagaaaaacaaacagcgGGCAAGGATGcctccacacagctctcacaGATCGTTTCCCAATACTTGAAAtacatacgttttttttttttatggccaCATGCACTGACATGCACATGAGGCCAGAACGGCATAATaacagagaaactcagattaaaacacacacaaagggagTGTTACtttattctctgctcaggacgccattaACTCCACCATATCTTTTCATggcaaatatttgtttattgctatattaatgttctgaatatgTACAGCCTCTTTAATAACAATTGGTGCATTTATCATCATCATGGTATCTGAACGTTTAACAATATCATATTTTTAGTTATTTCAAGATACAATGAGTAACataattcaatatttttcaaAGGCTATCTAAACATAATAAATGTATAGCTGTTTGGGTCCCAAAAACACTCCATCCGCTACGGACAGGCATGTTTTGAACGGGCACTGTTTTAGCTATGTGAAATAGCCTACATAAAAATGAATACACTAATAATAAACCGcaataataaacagcaataataataatactagtATAATAGTTATAAATTtctcatttttatttgaatCCATACATGAAATGCAGCAAGGAATACAAGAACAAAAGTTCAATGAGCAAAGTAAACTAATGAATCTAACACTGTACTTCTGCACTGTGGCTACAGACTAGAGGCGGcacattgattgattgattttctaTGGCACGTACTGCGTTTATGGAGGGGACAACACTATGGGTGCTGGAGGTACCACCCTGGTCATGAAATAAAAGAGGAAACAGCAAGTACTGATACAGTGAAATCTTACGGGTTCATTGGAATGTCGACAACAACACAAGGCCATTGTACTGTAAATACTAACCAAGTCAAGCATCTCAAATCACTGGGAGATACTGGAAGTCACCCTGAGGTAACCGAAAACAAGTCATGGTATGGCTCTCATCAGGAACAACAATAACATGTCAGTAATCATTTTGTTAGAACAAGGCTCAGTTTTTAAAAAACAGAATACTTGTAATATCATGTTGGAACAAAACTTTTCAAATGTAAGGAGGAAACCACTGGACCAGGATCACCAAACAgattcaagttaattaatagaCTAAATATGGTTACATGTGaagtgttttgtgtttctttccGATACCTTTGTCGTCATTTAAtgacagaataaaaaaatgtaaatcccGCA
>XR_005639304.1
TTATAAATCGTGATAGGAATACAGTAGTGCCACTGTTTTGGGCGTCTGTCATTAAAACTCAGCTGCTGCACTGAATGTCTGGCTGTCACTTAAaaactcattagccaatggggacgcacctcTGAAAAGACCCGCCCATGCAAGAGGTGTGTCAGGCAGTGCAATCAAGGGAGCTGGGATCATGACCGCAAGGGTGAAAGAGTCTGATCAGtgcagaaagaagaaaagggaactgtaaacaaagttGTGAAGAAACACactgggagaagaggaaaatacAACCAGGAAAGAGCAGTCAAAGGAAACCATCAGTAATTTGGACATGatGGCTGTAACTTCTCGACCAGAACTGTTTGATTTTCACGGAGTCTGCATGACTCACTTTTACACAGACAACTGGGAGAACATGCAAAACTTTCAGGCCAGGCCAGATGATATACTTATTGCAACATACCTCAAAGCAGGAACCTACATCCTTGAACTGCTGTATTTTGGTCAGACAGAGCGTCAGACATCCATCCCTATTTATAACAGGGTGCCTATGTTGGAGGCCGCCTTCCCTTCTCTGCAGCCAGGTTGAATTAACTATGGTATATACTCACCATATTACATATGTCACAAATATGCAAACACTTTTATGACGTGGTGGTAATTCTCAGTCTTTTACTTAAATCAGTAAACTAAATTGTTCACATGGATTCACATGTCATTCTgttatattgtatattatacagtatgtaaaggCTGTGTGCCAGGGAGTGTGCAATAAATTGAAGGAGCTGTACCCAAAATactgagaagaaaaacaaacagcgGGCAAGGATGcctccacacagctctcacaGATCGTTTCCCAATACTTGAAAtacatacgttttttttttttatggccaCATGCACTGACATGCACATGAGGCCAGAACGGCATAATaacagagaaactcagattaaaacacacacaaagggagTGTTACtttattctctgctcaggacgccattaACTCCACCATATCTTTTCATggcaaatatttgtttattgctatattaatgttctgaatatgTACAGCCTCTTTAATAACAATTGGTGCATTTATCATCATCATGGTATCTGAACGTTTAACAATATCATATTTTTAGTTATTTCAAGATACAATGAGTAACataattcaatatttttcaaAGGCTATCTAAACATAATAAATGTATAGCTGTTTGGGTCCCAAAAACACTCCATCCGCTACGGACAGGCATGTTTTGAACGGGCACTGTTTTAGCTATGTGAAATAGCCTACATAAAAATGAATACACTAATAATAAACCGcaataataaacagcaataataataatactagtATAATAGTTATAAATTtctcatttttatttgaatCCATACATGAAATGCAGCAAGGAATACAAGAACAAAAGTTCAATGAGCAAAGTAAACTAATGAATCTAACACTGTACTTCTGCACTGTGGCTACAGACTAGAGGCGGcacattgattgattgattttctaTGGCACGTACTGCGTTTATGGAGGGGACAACACTATGGGTGCTGGAGGTACCACCCTGGTCATGAAATAAAAGAGGAAACAGCAAGTACTGATACAGTGAAATCTTACGGGTTCATTGGAATGTCGACAACAACACAAGGCCATTGTACTGTAAATACTAACCAAGTCAAGCATCTCAAATCACTGGGAGATACTGGAAGTCACCCTGAGGTAACCGAAAACAAGTCATGGTATGGCTCTCATCAGGAACAACAATAACATGTCAGTAATCATTTTGTTAGAACAAGGCTCAGTTTTTAAAAAACAGAATACTTGTAATATCATGTTGGAACAAAACTTTTCAAATGTAAGGAGGAAACCACTGGACCAGGATCACCAAACAgattcaagttaattaatagaCTAAATATGGTTACATGTGaagtgttttgtgtttctttccGATACCTTTGTCGTCATTTAAtgacagaataaaaaaatgtaaatcccGCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639302.1 True 2175 lncRNA 0.38 3 16680586 16683534
XR_005639303.1 False 2031 lncRNA 0.38 4 16680581 16683534
XR_005639304.1 False 2009 lncRNA 0.38 4 16680581 16683534

Neighbor

gene id symbol gene type direction distance location
LOC120559511 LOC102311931,LOC106676355,LOC102214845,LOC102799804 coding upstream 1237 16670828 ~ 16679344 (+)
LOC120559510 LOC102311931,LOC106676355,LOC102214845 coding upstream 13932 16660467 ~ 16666649 (+)
b3galt4 b3galt4,LOC104957801,LOC102791999 coding upstream 31434 16646183 ~ 16649147 (+)
LOC120559103 rbsn coding upstream 55163 16618463 ~ 16625418 (+)
trh trh coding upstream 66793 16611217 ~ 16613788 (+)
qars1 qars,LOC102790389 coding downstream 26444 16709978 ~ 16718188 (+)
LOC120559487 qrich1,LOC103362963 coding downstream 35638 16719172 ~ 16726239 (+)
LOC120559776 NA coding downstream 49460 16732994 ~ 16740699 (+)
LOC120559617 LOC107391139,LOC106528268 coding downstream 135305 16818839 ~ 16820426 (+)
ren ren,ctse coding downstream 251343 16934877 ~ 16940282 (+)
G50326 NA non-coding upstream 54363 16605965 ~ 16626218 (+)
G50320 NA non-coding upstream 99588 16580059 ~ 16580993 (+)
G50318 NA non-coding upstream 111199 16567001 ~ 16569382 (+)
LOC120558722 NA non-coding upstream 134746 16544269 ~ 16545835 (+)
G50280 NA non-coding upstream 254761 16425618 ~ 16425820 (+)
G50410 LOC103368435 non-coding downstream 143346 16826880 ~ 16829880 (+)
G50493 LOC103467546,LOC102230394,LOC105927130,LOC106947997,LOC103145058,LOC101167287,LOC104935375,LOC108231917 non-coding downstream 415088 17098622 ~ 17104964 (+)
G50505 LOC103354436 non-coding downstream 451154 17134688 ~ 17135490 (+)
G50509 NA non-coding downstream 467648 17151182 ~ 17151913 (+)
G50518 NA non-coding downstream 479645 17163179 ~ 17163665 (+)
LOC120559923 NA other upstream 272120 16397669 ~ 16408461 (+)
brpf1 brpf1 other upstream 284373 16380044 ~ 16396208 (+)
LOC120559119 LOC104967193 other upstream 300936 16322821 ~ 16379645 (+)
LOC120559121 NA other upstream 369564 16304312 ~ 16311017 (+)
slc6a1a iqsec1,LOC104940213,LOC107088165 other upstream 711250 15885990 ~ 15969331 (+)
eif2d eif2d other downstream 294363 16977897 ~ 16994701 (+)
G50523 slc6a6,LOC104935489,LOC101165803,LOC100694392,LOC102780524 other downstream 502377 17185911 ~ 17197173 (+)
LOC120559485 lime1,LOC103354460,LOC103467936,LOC105926125,LOC107096010,LOC103141841 other downstream 1057837 17741371 ~ 17786398 (+)
opn7b LOC103364157,LOC103467481 other downstream 1572358 18255892 ~ 18300333 (+)
G50983 LOC103366028 other downstream 1998609 18682143 ~ 18686302 (+)

Expression


Co-expression Network