LOC120559638


Basic Information

Item Value
gene id LOC120559638
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4858268 ~ 4858785 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639339.1
CCCCTACTCACAGCTGTACAGGGTCTGAGCAACAATGGCACAAACCCAGGACCCAgGGTTTCAAGCCTGGTCCAACAAATGAGATGGTAGTGTTGTCAGCTCAGCCCAAGGAGAGAAGAGTGGCTGAAGGAATCAGGAGTAACTTATACAAAGGAGCCTGTAACCTGACCTGTGACCTTCCAGACATGTCAGTCCTTCGGTTGAATGACATCTACCAAGGCATGCCAAGGGAAACTGCTCC

Function

GO:

id name namespace
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639339.1 True 241 lncRNA 0.51 3 4858268 4858785

Neighbor

gene id symbol gene type direction distance location
LOC120558632 LOC101473708,LOC108431628,LOC107592856 coding upstream 271204 4431388 ~ 4587064 (+)
LOC120559099 NA coding upstream 576742 4266875 ~ 4281526 (+)
LOC120558381 LOC100699862,LOC103374679,LOC104941073 coding upstream 599697 4254640 ~ 4258571 (+)
LOC120559787 LOC103357833 coding upstream 677932 4084694 ~ 4180336 (+)
mfn2 mfn2 coding upstream 798555 4030523 ~ 4059713 (+)
LOC120558307 NA coding downstream 517518 5376303 ~ 5387260 (+)
npbwr2b LOC103358254,LOC104941021 coding downstream 888424 5747209 ~ 5750232 (+)
oprl1 oprl1 coding downstream 1205065 6063850 ~ 6234843 (+)
LOC120559680 fam187b,LOC104965325,LOC102795245 coding downstream 1403238 6262023 ~ 6272680 (+)
rgs19 LOC103373111 coding downstream 1487323 6346108 ~ 6393502 (+)
G47276 NA non-coding upstream 79713 4778117 ~ 4778555 (+)
LOC120559496 NA non-coding upstream 85962 4769280 ~ 4772306 (+)
LOC120559518 NA non-coding upstream 91494 4762389 ~ 4766774 (+)
LOC120558318 NA non-coding upstream 191397 4659466 ~ 4666871 (+)
LOC120558383 NA non-coding upstream 593636 4258819 ~ 4264632 (+)
G47307 NA non-coding downstream 45364 4904149 ~ 4920830 (+)
G47308 NA non-coding downstream 45711 4904496 ~ 4914494 (+)
G47310 NA non-coding downstream 110144 4968929 ~ 4969299 (+)
G47314 NA non-coding downstream 127496 4986281 ~ 4986779 (+)
G47369 NA non-coding downstream 496850 5355635 ~ 5356111 (+)
LOC120559501 NA other upstream 82910 4772932 ~ 4775358 (+)
gpr173 LOC104932793,LOC101475032,LOC100694027,LOC104957049 other upstream 992470 3843064 ~ 3865798 (+)
LOC120559404 NA other upstream 1343510 3448104 ~ 3514758 (+)
LOC120559414 NA other upstream 1553631 3279361 ~ 3304637 (+)
LOC120559392 NA other upstream 1570179 3146481 ~ 3288089 (+)
G47444 NA other downstream 1340261 6199046 ~ 6200594 (+)
ccm2l ccm2l,LOC102778549 other downstream 1839208 6697993 ~ 6720932 (+)
G47903 LOC104965021 other downstream 3253656 8112441 ~ 8116228 (+)
pkig pkig other downstream 3483965 8342750 ~ 8380578 (+)
LOC120559763 NA other downstream 3619338 8478123 ~ 8497394 (+)

Expression


Co-expression Network