LOC120559724


Basic Information

Item Value
gene id LOC120559724
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21895341 ~ 21896456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639358.1
tctgtcactgttttggcgtagggaggaggggccTGAGGGGAGGGACAAAGAGGGCGTGGTTTACAGGTAATTTGCATATGATTTGCATACTGTGAGAGACTGCACCTCCACAGGCATCCTCACAGATTACCTATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaaGATATACAAGATCTTTTCTTGGAGGGGGACCATGACAGAGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCTACAGACTATGGCAGAACTGAGGGCAGCCATTTACCCTGTGACTAACTCCTAGTACAATGGCGGATAGCTTTGCAACACTGCACTTAACTATGTGATTCTTCACACATAAACATGGCAGGATAACACAGGAAAAccattttgttgtttaaaatgaCACATACCACTACTACTTTATATGTAGTACTGATTTTAATCCTTAACAGTTTTTGAAATaacatgcatttacagtatggaCTCCAGCAAAACAGTTAAATCTGTACCTTTTCAatgaataacaaataaatatattcaagtAAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639358.1 True 576 lncRNA 0.42 2 21895341 21896456

Neighbor

gene id symbol gene type direction distance location
ribc1 NA coding upstream 67451 21823518 ~ 21827890 (+)
tmem9 tmem9,LOC107707676,LOC106572715,LOC107669678 coding upstream 114391 21776471 ~ 21780950 (+)
zgc:153867 LOC107390870,LOC103467339,LOC102296328,LOC104956861,LOC105928965,LOC106950810,LOC106525009,LOC101167617,LOC102221965,LOC100708807,LOC101480989 coding upstream 148624 21737480 ~ 21746717 (+)
c1galt1a LOC104956867 coding upstream 275140 21607339 ~ 21620201 (+)
LOC120559688 NA coding upstream 340146 21553252 ~ 21555195 (+)
idh3g idh3g coding downstream 126378 22022834 ~ 22028294 (+)
zgc:158263 LOC104932850,LOC104967525,LOC101474144,LOC102796628 coding downstream 214531 22110987 ~ 22119609 (+)
cacnb3b LOC103363728,LOC104967530,LOC100705687,LOC101472360 coding downstream 287840 22184296 ~ 22199110 (+)
rnd1b LOC101472065,LOC103358261,LOC100705424,LOC104932892,LOC103384592 coding downstream 306635 22203091 ~ 22213864 (+)
ptges3a LOC107390842,LOC103368333,LOC104967534,LOC100704884,LOC106525288,LOC108244561,LOC101471106 coding downstream 344026 22240482 ~ 22244763 (+)
G51902 smc1a non-coding upstream 74666 21819865 ~ 21820675 (+)
G51900 smc1a non-coding upstream 81710 21812612 ~ 21813631 (+)
G51811 NA non-coding upstream 317086 21577388 ~ 21578255 (+)
G51761 LOC103385089,LOC104932540,LOC104956873 non-coding upstream 514092 21379001 ~ 21381249 (+)
G51739 NA non-coding upstream 519078 21376031 ~ 21376263 (+)
G51921 huwe1 non-coding downstream 2668 21899124 ~ 21900231 (+)
G51922 huwe1 non-coding downstream 3988 21900444 ~ 21901003 (+)
G51927 NA non-coding downstream 8599 21905055 ~ 21906248 (+)
G51935 NA non-coding downstream 17869 21914325 ~ 21914837 (+)
G52006 NA non-coding downstream 134753 22031209 ~ 22031519 (+)
LOC120559721 cacna1s,LOC103368470 other upstream 87427 21783217 ~ 21807914 (+)
birc5b LOC107086758,LOC102206178,LOC102295711,LOC100709346,LOC106950807,LOC103141143,LOC106920826 other upstream 175218 21717109 ~ 21720123 (+)
G51804 NA other upstream 335992 21558890 ~ 21559349 (+)
G51734 acvr1b,LOC100709886,LOC101485924 other upstream 530911 21361290 ~ 21364430 (+)
G51716 NA other upstream 604379 21289588 ~ 21290962 (+)
G51926 NA other downstream 7086 21903542 ~ 21904077 (+)
avpr2aa avpr2,LOC105897269 other downstream 150307 22046763 ~ 22060645 (+)
LOC120558641 LOC103363734,LOC104967523 other downstream 193741 22090197 ~ 22094890 (+)
G52210 LOC104964406,LOC106525460,LOC105931770 other downstream 659873 22556329 ~ 22560328 (+)
LOC120559933 NA other downstream 665698 22562154 ~ 22562521 (+)

Expression


Co-expression Network