G60862 (LOC103353854,LOC100712335)


Basic Information

Item Value
gene id G60862
gene name LOC103353854,LOC100712335
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11779939 ~ 11790338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU81601
TGGCTTTACGTAGGCATTTCCAAGGTCAGACACATCACTGAAAATCTAATGTTTAGATTTAGTGGCATGGTTTCTACTGTAAGGAAAGCACTACTTGAAATGAAACTGTCATGAGAAGGTTGTATATCTTCAATGTGTGTCttcaatgcaaaatacaattttgttCTAACTGTGAAGCAGAGAAATAATTGTCCCAGTATACTCTTTAACCAGTTTTCATTTATAGCACATACTGAAGCATTTTATCCAATCATCTAAACTAATTCACATCCATTACTTTTCCAAAGAAATAAAAGTCCCACAGTATACAGTAGACAACATTCAACACAAATCCAATCTCGTCCAATAAACTTTGATCAATATCAATTCACTCAAAAACGTTAAAAGAGTTTGGTTTATGAGTAAACAGCAACTGAAtcatatacaacatctagcctATATTTGATGTGTCATACCAGGGGATAAAGCAGAAGGAGAAGTCGTAGTTTGTTACTTCTGAGGGCTGAGGCAAAGCACTGGAACTTCTTAACTGGTCTGCTCTTCTTTCTACAAGTCTTTGAGGGCTTTTAGAAGGCGAGTAGGGGTGAAGATTTCAGTTGATTAAATGTCTTTTATTCTGCAGGCGGCTCCTCTGGCCCCTCTGGAGGGGCGTTGGGGTCCAGGAAGTCTGGGTGCTGTAGTTCCTTTAAGTATTTAGGTGGGGTGAGAATGTGGGTGGAACCAATCAGGGCCTCCCACTTGCCATTGGCCTGGGTGACCTCATACACACAGCGCATCTCGCTGTACGTCATCCCTCCAATAATAAAGACGATAATCCTTGGCCCCGTCTTCATCTCTGTGGGGCCCCTGTTCTTGTGCCAGTTACCATAGCGAGCACTTGAGGGAGCGCTGGCTTTGGCAGATGCTTGTCGCTGGGAAATGTACGGGTACTGCTTGGGGTCAAGTTTGTCCTCGATGGCGTCCTCAATAAGATCCTTCACAAGAGGAGTCCACCTAGAGAGCTGGTAGGTCTGCTCACTGATTCGCTCTTTACGATCAGGCTTCTTGGCTTTCTTGGCGGTGCCCTCAGAGACAATGGGAATGCCCATGTGGGCCATGTTGGAAATTATGTCACTGTCCTCTGGTGGGATGCTGGCATGCTGAAGAAGCTTACACAGGTTCTCC
>TU81603
cagtatatagccATTTAAGATTATTTACCTTTATAGCTTTATGTGCTACAAGTTCCTATCTTCTCATTATGTATATGCAGTGTTAGCATGGAACAGTAAAGCCAGTGATCAACTAGGAATACATGGATGACTTCagtgaatatatttttttacaggtAAGGTCACCATCAGGAGAGTCTACCAAAAAACACGTACACGTACAGGTATTagaaatacagataagaaacaAAAGGACCAGGATCAGCTATTGCAGAGATCAATTGATCAATGTAAGACACTCAGCAGGTGGACTGACATGGAGGAACACAGGGATTCACAAATCACATCATGACTTGTGTATTTACTTACAAATGTCTTTTATTCTGCAGGCGGCTCCTCTGGCCCCTCTGGAGGGGCGTTGGGGTCCAGGAAGTCTGGGTGCTGTAGTTCCTTTAAGTATTTAGGTGGGGTGAGAATGTGGGTGGAACCAATCAGGGCCTCCCACTTGCCATTGGCCTGGGTGACCTCATACACACAGCGCATCTCGCTGTACGTCATCCCTCCAATAATAAAGACGATAATCCTTGGCCCCGTCTTCATCTCTGTGGGGCCCCTGTTCTTGTGCCAGTTACCATAGCGAGCACTGGAAGATGTGAAACAAGGACAAGGACATAGATAAGCACTTACTGCAAAACATTACATTGAAAGTTAATGGGTTTTTCCAGTGAATGTAGATTTTTATTCTTCCTTTGAGTCAATATTGTAAGACTCTTAT

Function

NR:

description
PREDICTED: syntaxin-binding protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81601 True 1164 lncRNA 0.44 6 11779939 11790338
TU81603 False 754 lncRNA 0.42 2 11787766 11789107

Neighbor

gene id symbol gene type direction distance location
niban2b LOC106585213,LOC107560233,LOC107715759 coding downstream 63991 11641802 ~ 11715948 (-)
npdc1b npdc1 coding downstream 140501 11608619 ~ 11639438 (-)
LOC120561251 NA coding downstream 425033 11351854 ~ 11354906 (-)
sdf2l1 sdf2l1,LOC106531766,LOC106570867 coding downstream 610612 11160449 ~ 11169327 (-)
top3b top3b coding downstream 687977 10986105 ~ 11091962 (-)
noxa1 LOC103359690 coding upstream 291161 12081499 ~ 12116241 (-)
man1b1b LOC103359688 coding upstream 368295 12158633 ~ 12220357 (-)
LOC120560512 NA coding upstream 462829 12253167 ~ 12293788 (-)
ehmt1a NA coding upstream 767229 12557567 ~ 12600992 (-)
arrdc1a LOC103353853,LOC104923796 coding upstream 820078 12610416 ~ 12635123 (-)
G60861 LOC102216235,LOC100712335,LOC107102274 non-coding downstream 317 11769692 ~ 11779622 (-)
G60858 LOC103141940,LOC106938081,LOC103353854 non-coding downstream 13884 11728531 ~ 11766055 (-)
G60857 NA non-coding downstream 55870 11723849 ~ 11724069 (-)
G60817 fut7,LOC103353858 non-coding downstream 203223 11571952 ~ 11576716 (-)
G60813 NA non-coding downstream 229192 11548060 ~ 11550747 (-)
G60866 NA non-coding upstream 19972 11810310 ~ 11810640 (-)
G60867 NA non-coding upstream 26063 11816401 ~ 11816702 (-)
G60905 NA non-coding upstream 106979 11897317 ~ 11898093 (-)
G60904 NA non-coding upstream 107928 11898266 ~ 11899664 (-)
G60909 NA non-coding upstream 180926 11971264 ~ 11971485 (-)
abca2 abca2 other downstream 186279 11285385 ~ 11593660 (-)
G60715 NA other downstream 590198 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 1260972 10122152 ~ 10518967 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other downstream 3052496 8643403 ~ 8727443 (-)
G60145 NA other downstream 3377373 8401022 ~ 8402566 (-)
LOC120561001 whrn,LOC102797690 other upstream 111312 11901650 ~ 12061646 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other upstream 503369 12293707 ~ 12555285 (-)
G61264 NA other upstream 1798701 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 2537813 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 3148637 14938975 ~ 14939047 (-)

Expression


Co-expression Network