G69229 (chek2)


Basic Information

Item Value
gene id G69229
gene name chek2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42970084 ~ 43014065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU92739
TGAAGTCTTCACGTCCACGTCGGGATACGGGCTGGCCGTGGACGCGTGGAGCCTCGGAGTCCTGCTCTTCGTCTGtctgGGTGGTTATCCTCCGTTCCATGAAAACTTCAGCCGCCAGTCGATCACGGAGCAGATCATCCGCGGAGAGTTCACCATGGTGCCGTCCAAATGGAAACACATCTCTGACCCAGcgAAGGATGTGGTCAGGAAGCTGCTGGTAGTTGACCCCAGTAAGAGGATGACTATAGATGAAGCTCTGCAGCATCCCTGGCTCCAGGATGATGTCATGATGAAGACGGCTCACAGACTCATGTTCCCCTCCGacgctgatgctgctgctgccgccgctgccatgcaggAAGTGGAGTCAGCCTCCGGAGGGGAAACGAGGGGACGCggtgaaggagaagaagaagaggaaccTCCAGCCAAACGCAGCCAAGCCCCGCCCC
>TU92740
TGAAGTCTTCACGTCCACGTCGGGATACGGGCTGGCCGTGGACGCGTGGAGCCTCGGAGTCCTGCTCTTCGTCTGtctgGGTGGTTATCCTCCGTTCCATGAAAACTTCAGCCGCCAGTCGATCACGGAGCAGATCATCCGCGGAGAGTTCACCATGGTGCCGTCCAAATGGAAACACATCTCTGACCCAGGTAAACACTACGggacacctgaacacacctctgaCCCAGGTAATCACTACGggacacctgaacacacctctgaCCCAGGTAATCACTACGggacacctgaacacacctctgaCCCAGGTACAggacacctgaacacacctctgaCCCAGGTAAACACACCTGTCTGGAGAAGATGAAAGCATGAAGGACTTGTTCAGGtctgagtgtgagagtgtgggTCTGGTTCTGGAGATGGTTCTTAATGACAAGGAACAGGACTGACTACCGTCTGATTTACACAACTACTACAATACTACTACAATACTACTACAATACTACCACAATACTACTACAATATTACTACAATATTACTACAATATTACTACAATACTACTACAATACTACTACAATATTACTACAATACCACTACAATACTAGAGTCGAAAAACCTGTCAAAAGCATGGTGAAACAACACTGCTGTAATACTCGTTAGGACTAAAATATGACGTCAGTTTTCACTAAtagggtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtctgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU92741
TGAAGTCTTCACGTCCACGTCGGGATACGGGCTGGCCGTGGACGCGTGGAGCCTCGGAGTCCTGCTCTTCGTCTGtctgGGTGGTTATCCTCCGTTCCATGAAAACTTCAGCCGCCAGTCGATCACGGAGCAGATCATCCGCGGAGAGTTCACCATGGTGCCGTCCAAATGGAAACACATCTCTGACCCAGcgAAGGATGTGGTCAGGAAGCTGCTGGTAGTTGACCCCAGTAAGAGGATGACTATAGATGAAGCTCTGCAGCATCCCTGGCTCCAGGATGATGTCATGATGAAGACGGCTCACAGACTCATGTTCCCCTCCGacgctgatgctgctgctgccgccgctgccatggAAGTGGAGTCAGCCTCCGGAGGGGAAACGAGGGGACGCggtgaaggagaagaagaagaggaaccTCCAGCCAAACGCAGCCAAGCCCCGCCCC

Function

symbol description
chek2 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cellular response to DNA damage stimulus. Predicted to be active in cytoplasm and nucleus. Is expressed in eye; head; optic tectum; and proliferative region. Human ortholog(s) of this gene implicated in several diseases, including Li-Fraumeni syndrome 2; breast cancer (multiple); colorectal cancer; osteosarcoma; and prostate cancer. Orthologous to human CHEK2 (checkpoint kinase 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92739 False 452 TUCP 0.59 5 42970084 43014065
TU92740 True 786 lncRNA 0.47 3 42971126 43014065
TU92741 False 449 TUCP 0.59 5 42970084 43014065

Neighbor

gene id symbol gene type direction distance location
LOC120560194 NA coding downstream 11811 42873897 ~ 42958273 (-)
LOC120561115 NA coding downstream 115742 42822405 ~ 42854342 (-)
LOC120560237 NA coding downstream 147439 42819874 ~ 42822645 (-)
LOC120560234 plpp7,LOC107097912,LOC106531399,LOC103368069,LOC105917130,LOC101484670,LOC108248082 coding downstream 308065 42658356 ~ 42662019 (-)
LOC120560191 NA coding downstream 698873 42262425 ~ 42271211 (-)
snapc4 NA coding upstream 91277 43105342 ~ 43141553 (-)
LOC120561120 NA coding upstream 287554 43301619 ~ 43304446 (-)
LOC120561121 NA coding upstream 294283 43308348 ~ 43310847 (-)
LOC120560199 LOC108248098,LOC101175325,LOC102290088,LOC101464010,LOC103156294,LOC103460382,LOC102193617 coding upstream 466896 43480961 ~ 43528118 (-)
fibcd1a fibcd1,LOC102791113,LOC101470696 coding upstream 543652 43557717 ~ 43582312 (-)
G69184 NA non-coding downstream 150750 42780818 ~ 42819334 (-)
LOC120560255 NA non-coding downstream 198651 42768403 ~ 42771433 (-)
G69189 NA non-coding downstream 266092 42696173 ~ 42703992 (-)
G69175 NA non-coding downstream 314162 42653635 ~ 42655922 (-)
G69179 NA non-coding downstream 318678 42650291 ~ 42651406 (-)
G69254 NA non-coding upstream 7067 43021132 ~ 43022838 (-)
G69258 NA non-coding upstream 23482 43037547 ~ 43038477 (-)
G69266 NA non-coding upstream 75576 43089641 ~ 43091900 (-)
G69246 NA non-coding upstream 89895 43103960 ~ 43104752 (-)
G69271 NA non-coding upstream 137797 43151862 ~ 43153110 (-)
LOC120561114 NA other downstream 160462 42663363 ~ 42809622 (-)
G69140 NA other downstream 433126 42497565 ~ 42536958 (-)
G69105 NA other downstream 837503 42130611 ~ 42132581 (-)
G68921 NA other downstream 853823 42107630 ~ 42116261 (-)
G69104 NA other downstream 855325 42112792 ~ 42114759 (-)
card9 card9,LOC108245830 other upstream 62165 43076230 ~ 43099165 (-)
pomt1 pomt1,LOC103397945,LOC102782456,LOC103398975 other upstream 129323 43143388 ~ 43178989 (-)
G69249 NA other upstream 196954 43211019 ~ 43218894 (-)
LOC120561119 LOC102192266,LOC107386210,LOC101154874,LOC101486486 other upstream 209412 43223477 ~ 43251312 (-)
G69356 LOC106941104,LOC103460379 other upstream 357702 43371767 ~ 43380599 (-)

Expression


Co-expression Network