pomt1 (pomt1,LOC103397945,LOC102782456,LOC103398975)


Basic Information

Item Value
gene id pomt1
gene name pomt1,LOC103397945,LOC102782456,LOC103398975
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43143388 ~ 43178989 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU92756
GGCAGCACCAACCGAGCACCGGAACCATCGAGCGGCCGCTGCAGCAAACTAACCGGAGAAAACGGCTCGCAGCTACCGACCGGAGCAGCTGGAGCCACCGGAGGACAACCGACACCTTTACCGACAGCATGCACGGTTCAGGGGTAACGGAGTGACGTCACAAGctgTGTCAGGATGCTGCAGCTCCCCCTGGTGGTGACGGCTGAGGTGGACTTGGTCCTGCTGCtggtctccttcctctctctctggacCAGACTCACCCAGCTGGGATACCCCAACAATGTGGtgtttgaTGAGGTGTACTACGGCCAGTTTGTGTCTCTCTACATGAAGAGAGTGTTCTTCATCGATGACAGCGGGCCGCCGCTCGGTCACATGATCCTGGCCCTCGGAGcgtACCTCGGAGGATTTGATGGAAACTTTGTGTGGAACAGAATCGGAGCAGAGTACCCCAGCAGTGTGAGCGTGGTGTGTCTGCGTCTCCTCCCGGCTCTCTGTGGCGCTCTGTGTGTTCCTCTGGTCTACCTGCTGACCCTGGAGCTCAAGTTCTCTCACCTGTCGGCTCTGGGAGCcgccgtgctgctgctgctcgAGAACTCCCTGATCGTCCAATCACGGTTCATGTTACTGGAGTCTGTTCTCATCTTCTTCGTGCTGCTGGCCTTCTTCTCCTACCTCAAGTTCCACAACGCTGCCCCCGACAGCGTCTTCAGGTTCGGGTGGCTGCTCCTCTCTGGAGCTGCGTGTGCCG
>XM_039802524.1
GGAAGCAGCAACAGAGCAGGCAGCACCAACCGAGCACCGGAACCATCGAGCGGCCGCTGCAGCAAACTAACCGGAGAAAACGGCTCGCAGCTACCGACCGGAGCAGCTGGAGCCACCGGAGGACAACCGACACCTTTACCGACAGCATGCACGGTTCAGGGGTAACGGAGTGACGTCACAAGctgTGTCAGGATGCTGCAGCTCCCCCTGGTGGTGACGGCTGAGGTGGACTTGGTCCTGCTGCtggtctccttcctctctctctggacCAGACTCACCCAGCTGGGATACCCCAACAATGTGGtgtttgaTGAGGTGTACTACGGCCAGTTTGTGTCTCTCTACATGAAGAGAGTGTTCTTCATCGATGACAGCGGGCCGCCGCTCGGTCACATGATCCTGGCCCTCGGAGcgtACCTCGGAGGATTTGATGGAAACTTTGTGTGGAACAGAATCGGAGCAGAGTACCCCAGCAGTGTGAGCGTGGTGTGTCTGCGTCTCCTCCCGGCTCTCTGTGGCGCTCTGTGTGTTCCTCTGGTCTACCTGCTGACCCTGGAGCTCAAGTTCTCTCACCTGTCGGCTCTGGGAGCcgccgtgctgctgctgctcgAGAACTCCCTGATCGTCCAATCACGGTTCATGTTACTGGAGTCTGTTCTCATCTTCTTCGTGCTGCTGGCCTTCTTCTCCTACCTCAAGTTCCACAACGCTGCCCCCGACAGCGTCTTCAGGTTCGGGTGGCTGCTCCTCTCTGGAGCTGCGTGTGCCGTCACggtgaAGTATATGGGGGTGTTCTcctacctgctgctgctgggcgTGGCTTCTCTGCACACCTGGAACCTGATTGGAGATCGAACCGTCAGTCACGTGAGTgtgtgtgtgcagtgtgtgtgtcgggCTGTGTGTCTGCTCGTGGTTCCTCTCCTTCTCTACGTGTTCTGGTTCTACGTCCACCTGACTCTGCTGCACCGTAGCGGACCGCACGACCAGCTGATGAGCTCCGCCTTCCAGGCCAGTCtggagggtggtCTCTCCAGGATCACTCAGGGTCAGCCTCTGGAAGTGGCTTACGGCAGTCAGGTGACTTTAAGAAGCTCCTCCTCCCAGCCAATCCCCTGCTGGCTCCACTCGCACAAAGTCAACTACCCAATCAGGTATGAGAATGGGCGGGGCAGCTCTCACCAGCAGCAGGTCACATGTTACCCTTTCAAAGACGTCAACAACTGGTGGATCATCAAAGACCCCGACAGACAGGATCTGGTGGTCAGCAGTCCTCCTCGACCAGTGCGTCACGGTGATGTCATCCAGCTGCTTCATGGGATGACATCACGCTTCCTCAACAGtcaTGATGTAGCAGCTCCCATGAGCCCTCACTCTCAGGAAGTGTCGGGTTACATTGACTTCAACGTCTCCATGGCAGCTCAGAACCTGTGGAGAGtgGACGTCCTGAACAGGGAGGCGGAGTCAGAGTCCTGGAAGACCATCCTGTCTGACGTCCGATTGGTCCACGTCAACACCTCGGCTGTCCTCAAGctgagtGGTGTGTCTCTTCCAGATTGGGGTTTCCGTCAGCTGGAGGTGGTAGCAgagaaacagtttaaatctcAGAGTGTTGGCTGGACCGTCGAGGAGCACCGATATGGAACCAgtcagGAGCAGAAGGAGAGGGAGGCGGAGCTTCACTCTCCGACCCACATCGACGTCGACAGAAAGATTTCCTTCTGGGCCAAATTCTTAGAACTTCAGtGGAAGATGCTGACGGTGAAACAGGAGGACTCGGAGCACAAATACAGCTCCTCCCCCCTCGAATGGGTTACCATGGAGACCAACATTGCATACTGGCTGCACTCGTCCACCAACGCTCAGATCCATCTGATTGGTAACCCGGTGTCGTGGGGCGTGGCCAACCTCAGCCTGCTGGCCTATCAGCTGCTGGCAGCAATCTACCTGCTGAGGAGGAGGCGGGGCTTCAAAGACCTCCCTgatgctgcgTGGGGTCAGTTTGTGTgtctggggtgtgtgtgtgttggtggctGGTTGGTGAACGTGGTCCCGTTCCTCCTGATGGAGAAAACTCTCTTCCTGTATCACTACCTGCCGGCTCTCTGCTACCTGCACCTGCTGAGCCCCGCCCTGctggagcacacacacactcacctgctcagCAGAGCGACACACCGGcgtgcgctgtgtgtgtgcgtgacggCCGTGCTGGTGTCGGTCTTCCTGTCCTATCGGACGTTCTGCCCTTTGACCTACGGCAGCCCCGAGCTGTCAGCCAATCAGCTGCAAGGACTCAAGTGGAGAGATTCCTGGGACATCCTGTACCGTCGTcgctagacagacagacagagacagacagacagacagacagacagacagacagagacggagacagacagacagacacggagacagacagacagacagacagacagacagacagaca

Function

symbol description
pomt1 Enables dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including digestive system; immature eye; muscle; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in cardiomyopathy; cleft lip; lissencephaly; and muscular dystrophy (multiple). Orthologous to human POMT1 (protein O-mannosyltransferase 1).

NR:

description
protein O-mannosyl-transferase 1 isoform X1

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG:

id description
K00728 POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU92756 False 751 TUCP 0.59 7 43173165 43178971
XM_039802524.1 True 2449 mRNA 0.57 20 43143388 43178989

Neighbor

gene id symbol gene type direction distance location
snapc4 NA coding downstream 1835 43105342 ~ 43141553 (-)
LOC120560194 NA coding downstream 185115 42873897 ~ 42958273 (-)
LOC120561115 NA coding downstream 289046 42822405 ~ 42854342 (-)
LOC120560237 NA coding downstream 320743 42819874 ~ 42822645 (-)
LOC120560234 plpp7,LOC107097912,LOC106531399,LOC103368069,LOC105917130,LOC101484670,LOC108248082 coding downstream 481369 42658356 ~ 42662019 (-)
LOC120561120 NA coding upstream 122630 43301619 ~ 43304446 (-)
LOC120561121 NA coding upstream 129359 43308348 ~ 43310847 (-)
LOC120560199 LOC108248098,LOC101175325,LOC102290088,LOC101464010,LOC103156294,LOC103460382,LOC102193617 coding upstream 301972 43480961 ~ 43528118 (-)
fibcd1a fibcd1,LOC102791113,LOC101470696 coding upstream 378728 43557717 ~ 43582312 (-)
LOC120560219 NA coding upstream 411055 43590044 ~ 43651535 (-)
G69246 NA non-coding downstream 38636 43103960 ~ 43104752 (-)
G69250 NA non-coding downstream 46769 43006859 ~ 43096619 (-)
G69266 NA non-coding downstream 51488 43089641 ~ 43091900 (-)
G69258 NA non-coding downstream 104911 43037547 ~ 43038477 (-)
G69254 NA non-coding downstream 120550 43021132 ~ 43022838 (-)
G69272 NA non-coding upstream 24672 43203661 ~ 43225724 (-)
G69273 NA non-coding upstream 46946 43225935 ~ 43226903 (-)
G69340 NA non-coding upstream 87828 43266817 ~ 43450492 (-)
G69342 NA non-coding upstream 95490 43274479 ~ 43275772 (-)
G69339 NA non-coding upstream 207169 43386158 ~ 43396705 (-)
card9 card9,LOC108245830 other downstream 44223 43076230 ~ 43099165 (-)
chek2 chek2,LOC102215705 other downstream 118338 43002255 ~ 43025050 (-)
G69229 chek2 other downstream 129323 42970084 ~ 43014065 (-)
LOC120561114 NA other downstream 333766 42663363 ~ 42809622 (-)
G69140 NA other downstream 606430 42497565 ~ 42536958 (-)
G69249 NA other upstream 32030 43211019 ~ 43218894 (-)
LOC120561119 LOC102192266,LOC107386210,LOC101154874,LOC101486486 other upstream 44488 43223477 ~ 43251312 (-)
G69356 LOC106941104,LOC103460379 other upstream 192778 43371767 ~ 43380599 (-)
phf19 phf19 other upstream 352244 43531233 ~ 43551988 (-)
LOC120560198 LOC106532130,LOC103370617,LOC108248104 other upstream 486798 43665787 ~ 43709261 (-)

Expression


Co-expression Network