fibcd1a (fibcd1,LOC102791113,LOC101470696)


Basic Information

Item Value
gene id fibcd1a
gene name fibcd1,LOC102791113,LOC101470696
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43557717 ~ 43582312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802481.1
CTCTCTCCTCGCGCGCGCAGATGGTCTCTTTTATCTTGAAACAGGAGAAATAAAGTCTTCATCTTCTGGACCCTGGAGACAGCGAGgaTGATGCTGAATGACAGGTGGACCATCATGAACAACAGCAGCTCAGAACTCGACAGCAAACGACCAACCAATCACAAGagatgCTGCAGCTTCCTGTTGTGGTCCGTTGTTACGCTGGTCGTCGTAGCAGTGGTTGCCATCACAACAGTCCTCATCCTGTACCTTAGCCAGTATCCTCTGCCATTCATCAGCAGTAACAGGGGTGGagtctccccctcctcctcgccCGTGATCTCGACCAATCCCAGAGACTCTGGCGCCCTGGTGTCAGTGTCCCGTGTGACGGACGGAGAGCCAATCAGCATCTTCCTAGACCCGAACTGCCCGGACTACAGCGAGAGCTTCCTGCGCTGGGAGGCGCTGCAGAGCTCCCTGCTGCACGCACTGACCAATCACAACTCAGACGGCTGGCAGGACACGGGATTGGCCCCCCGGCTGGCTGAGGAGCTGAAGGCGCTGGCGGGACACGCCCACCATCTCAGGCTGGAAGCTGATTCGCTGAAGAGAGGTCAGGGTGTTCTGGAGCAGCGGCTCGACGAGCTGCAAAGCGAGCAGAGACGCGTAATGCAGGTGTTGTCTGGAGGTCAGTCAGGTGTGTCCAAGCTGTCTGCAGGTTTCACTGATTCTGTGCTCGGCctacagagggagacagagagtctGAGGAGGCTGACCACAGATCTGAAGAAAGACTCCAACAACAGAGCTGTCCAGAGACCCAGAGACTGTAGTGATGTCATGGCGTCCGGTGTTTCTGAGGAAGGAGTTTATTCTGTGTTTCCGAAACATGATCCTGATGGTTTCATGGTTTACTGCGACATGAGCACTGATGGAGGAGGCTGGACGgtgatCCAGAGGAGGGAGGACGGCTCTGTGAATTTCTTCCGTGACTGGAAGGCGTATCGAGATGGTTTTGGAAAAACTACAGGAGAGCACTGGctaggTCTCCAGAGGATCTACTCTCTGACCAGGTCTGGAGGTTATGAGTTACGGATCGACATGGCTGACTTCGATAACGCCACGGCCTTCGCTCTCTACGGAGACTTCTCCGTCGGCCGGGACTCGGTCAACCCCGAGGAGGACGGGTACCCACTGGCTGTGGACCAGTACTCCGGGACCGCAGGCGACTCCCTCCTGAAGCATTCTGGGATGCAGTTCACCACCAAAGACCGAGACCAGGACCAGTCGGAGAACAACTGCGCGGCGTACTACCAGGGCGCCTGGTGGTACCGGAACTGCCACACCTCTAACCTGAACGGGCAGTACCTGAAGGGAGGCCACGCCTCCTACGCTGATGGGGTGGAGTGGTCCAGTTGGACCGGCTGGCAGTACTCGCTGCGCTTCACCGAGATGAAGATACGACCCAAACAAGgctcctgattggctgagaggAAGATACGACCCAAACAAGgctcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACAACCCAAACAAGGCTCCTGATTGGGTGAGAGGAAGATACGACCCAGACAAGACTCGTGATTGGCTGAGAAGAAAATACGACCCAAACAAGGCTCTTGATTGGCTGACAGGAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagagaAAGATACGACCCAAACAAGACTCCTGATTGACTGAgagtaatggtgcgttctttttgtccaccgaagtcgttttacgagttgttttccggagttacgacccggaagttgcaaa
>XM_039802482.1
CTCTCTCCTCGCGCGCGCAGATGGTCTCTTTTATCTTGAAACAGGAGAAATAAAGTCTTCATCTTCTGGACCCTGGAGACAGCGAGgaTGATGCTGAATGACAGGTGGACCATCATGAACAACAGCAGCTCAGAACTCGACAGCAAACGACCAACCAATCACAAGagatgCTGCAGCTTCCTGTTGTGGTCCGTTGTTACGCTGGTCGTCGTAGCAGTGGTTGCCATCACAACAGTCCTCATCCTGTACCTTAGCCAGTATCCTCTGCCATTCATCAGCAGTAACAGGGGTGGagtctccccctcctcctcgccCGTGATCTCGACCAATCCCAGAGACTCTGGCGCCCTGGTGTCAGTGTCCCGTGTGACGGACGGAGAGCCAATCAGCATCTTCCTAGACCCGAACTGCCCGGACTACAGCGAGAGCTTCCTGCGCTGGGAGGCGCTGCAGAGCTCCCTGCTGCACGCACTGACCAATCACAACTCAGACGGCTGGCAGGACACGGGATTGGCCCCCCGGCTGGCTGAGGAGCTGAAGGCGCTGGCGGGACACGCCCACCATCTCAGGCTGGAAGCTGATTCGCTGAAGAGAGGTCAGGGTGTTCTGGAGCAGCGGCTCGACGAGCTGCAAAGCGAGCAGAGACGCGTAATGCAGGTGTTGTCTGGAGGTCAGTCAGGTGTGTCCAAGCTGTCTGCAGGTTTCACTGATTCTGTGCTCGGCctacagagggagacagagagtctGAGGAGGCTGACCACAGATCTGAAGAAAGACTCCAACAACAGAGCTGTCCAGAGACCCAGAGACTGTAGTGATGTCATGGCGTCCGGTGTTTCTGAGGAAGGAGTTTATTCTGTGTTTCCGAAACATGATCCTGATGGTTTCATGGTTTACTGCGACATGAGCACTGATGGAGGAGGCTGGACGgtgatCCAGAGGAGGGAGGACGGCTCTGTGAATTTCTTCCGTGACTGGAAGGCGTATCGAGATGGTTTTGGAAAAACTACAGGAGAGCACTGGctaggTCTCCAGAGGATCTACTCTCTGACCAGGTCTGGAGGTTATGAGTTACGGATCGACATGGCTGACTTCGATAACGCCACGGCCTTCGCTCTCTACGGAGACTTCTCCGTCGGCCGGGACTCGGTCAACCCCGAGGAGGACGGGTACCCACTGGCTGTGGACCAGTACTCCGGGACCGCAGGCGACTCCCTCCTGAAGCATTCTGGGATGCAGTTCACCACCAAAGACCGAGACCAGGACCAGTCGGAGAACAACTGCGCGGCGTACTACCAGGGCGCCTGGTGGTACCGGAACTGCCACACCTCTAACCTGAACGGGCAGTACCTGAAGGGAGGCCACGCCTCCTACGCTGATGGGGTGGAGTGGTCCAGTTGGACCGGCTGGCAGTACTCGCTGCGCTTCACCGAGATGAAGATACGACCCAAACAAGgctcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACAACCCAAACAAGGCTCCTGATTGGGTGAGAGGAAGATACGACCCAGACAAGACTCGTGATTGGCTGAGAAGAAAATACGACCCAAACAAGGCTCTTGATTGGCTGACAGGAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagagaAAGATACGACCCAAACAAGACTCCTGATTGACTGAgagtaatggtgcgttctttttgtccaccgaagtcgttttacgagttgttttccggagttacgacccggaagttgcaaa
>XM_039802483.1
CTCTCTCCTCGCGCGCGCAGATGGTCTCTTTTATCTTGAAACAGGAGAAATAAAGTCTTCATCTTCTGGACCCTGGAGACAGCGAGgaTGATGCTGAATGACAGGTGGACCATCATGAACAACAGCAGCTCAGAACTCGACAGCAAACGACCAACCAATCACAAGagatgCTGCAGCTTCCTGTTGTGGTCCGTTGTTACGCTGGTCGTCGTAGCAGTGGTTGCCATCACAACAGTCCTCATCCTGTACCTTAGCCAGTATCCTCTGCCATTCATCAGCAGGGGTGGagtctccccctcctcctcgccCGTGATCTCGACCAATCCCAGAGACTCTGGCGCCCTGGTGTCAGTGTCCCGTGTGACGGACGGAGAGCCAATCAGCATCTTCCTAGACCCGAACTGCCCGGACTACAGCGAGAGCTTCCTGCGCTGGGAGGCGCTGCAGAGCTCCCTGCTGCACGCACTGACCAATCACAACTCAGACGGCTGGCAGGACACGGGATTGGCCCCCCGGCTGGCTGAGGAGCTGAAGGCGCTGGCGGGACACGCCCACCATCTCAGGCTGGAAGCTGATTCGCTGAAGAGAGGTCAGGGTGTTCTGGAGCAGCGGCTCGACGAGCTGCAAAGCGAGCAGAGACGCGTAATGCAGGTGTTGTCTGGAGGTCAGTCAGGTGTGTCCAAGCTGTCTGCAGGTTTCACTGATTCTGTGCTCGGCctacagagggagacagagagtctGAGGAGGCTGACCACAGATCTGAAGAAAGACTCCAACAACAGAGCTGTCCAGAGACCCAGAGACTGTAGTGATGTCATGGCGTCCGGTGTTTCTGAGGAAGGAGTTTATTCTGTGTTTCCGAAACATGATCCTGATGGTTTCATGGTTTACTGCGACATGAGCACTGATGGAGGAGGCTGGACGgtgatCCAGAGGAGGGAGGACGGCTCTGTGAATTTCTTCCGTGACTGGAAGGCGTATCGAGATGGTTTTGGAAAAACTACAGGAGAGCACTGGctaggTCTCCAGAGGATCTACTCTCTGACCAGGTCTGGAGGTTATGAGTTACGGATCGACATGGCTGACTTCGATAACGCCACGGCCTTCGCTCTCTACGGAGACTTCTCCGTCGGCCGGGACTCGGTCAACCCCGAGGAGGACGGGTACCCACTGGCTGTGGACCAGTACTCCGGGACCGCAGGCGACTCCCTCCTGAAGCATTCTGGGATGCAGTTCACCACCAAAGACCGAGACCAGGACCAGTCGGAGAACAACTGCGCGGCGTACTACCAGGGCGCCTGGTGGTACCGGAACTGCCACACCTCTAACCTGAACGGGCAGTACCTGAAGGGAGGCCACGCCTCCTACGCTGATGGGGTGGAGTGGTCCAGTTGGACCGGCTGGCAGTACTCGCTGCGCTTCACCGAGATGAAGATACGACCCAAACAAGgctcctgattggctgagaggAAGATACGACCCAAACAAGgctcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACAACCCAAACAAGGCTCCTGATTGGGTGAGAGGAAGATACGACCCAGACAAGACTCGTGATTGGCTGAGAAGAAAATACGACCCAAACAAGGCTCTTGATTGGCTGACAGGAAGATACGACCCAGACAAGactcctgattggctgagaggAAGATACGACCCAGACAAGactcctgattggctgagagaAAGATACGACCCAAACAAGACTCCTGATTGACTGAgagtaatggtgcgttctttttgtccaccgaagtcgttttacgagttgttttccggagttacgacccggaagttgcaaa

Function

symbol description
fibcd1 Enables chitin binding activity. Predicted to be involved in cell adhesion. Located in membrane.

NR:

description
PREDICTED: fibrinogen C domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802481.1 True 1862 mRNA 0.55 9 43557717 43582312
XM_039802482.1 False 1823 mRNA 0.55 10 43557717 43582312
XM_039802483.1 False 1856 mRNA 0.55 9 43557717 43582312

Neighbor

gene id symbol gene type direction distance location
LOC120560199 LOC108248098,LOC101175325,LOC102290088,LOC101464010,LOC103156294,LOC103460382,LOC102193617 coding downstream 29599 43480961 ~ 43528118 (-)
LOC120561121 NA coding downstream 246870 43308348 ~ 43310847 (-)
LOC120561120 NA coding downstream 253271 43301619 ~ 43304446 (-)
snapc4 NA coding downstream 416164 43105342 ~ 43141553 (-)
LOC120560194 NA coding downstream 599444 42873897 ~ 42958273 (-)
LOC120560219 NA coding upstream 7732 43590044 ~ 43651535 (-)
endog endog coding upstream 227317 43809629 ~ 43821302 (-)
LOC120560874 ntng2 coding upstream 250085 43832397 ~ 43868090 (-)
G69376 NA non-coding downstream 285 43556300 ~ 43557432 (-)
LOC120560252 NA non-coding downstream 27640 43528305 ~ 43530077 (-)
G69372 NA non-coding downstream 46347 43509948 ~ 43511370 (-)
G69371 NA non-coding downstream 73198 43484110 ~ 43484519 (-)
G69340 NA non-coding downstream 107225 43266817 ~ 43450492 (-)
G69379 NA non-coding upstream 2609 43584921 ~ 43585345 (-)
G69404 NA non-coding upstream 67833 43650145 ~ 43650465 (-)
G69454 NA non-coding upstream 157544 43739856 ~ 43804845 (-)
G69455 NA non-coding upstream 160968 43743280 ~ 43755105 (-)
G69463 NA non-coding upstream 187028 43769340 ~ 43771545 (-)
phf19 phf19 other downstream 5729 43531233 ~ 43551988 (-)
G69356 LOC106941104,LOC103460379 other downstream 177118 43371767 ~ 43380599 (-)
LOC120561119 LOC102192266,LOC107386210,LOC101154874,LOC101486486 other downstream 306405 43223477 ~ 43251312 (-)
G69249 NA other downstream 338823 43211019 ~ 43218894 (-)
pomt1 pomt1,LOC103397945,LOC102782456,LOC103398975 other downstream 378728 43143388 ~ 43178989 (-)
LOC120560198 LOC106532130,LOC103370617,LOC108248104 other upstream 83475 43665787 ~ 43709261 (-)

Expression


Co-expression Network