hpdb (hpd,LOC103375816,LOC107092762,LOC101157460,LOC104940904,LOC106516708)


Basic Information

Item Value
gene id hpdb
gene name hpd,LOC103375816,LOC107092762,LOC101157460,LOC104940904,LOC106516708
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42241736 ~ 42256884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802496.1
CAGAAACTTCTCTCTCAGTTTTTAACTTCAGAGTTCATTCAGAGAGTTTTACCCCGACGGAAACATGACGACGTACACAGATAAAGGTGAAAAGCACGAGCGCGGCAGCTTCCTCTGCTTCGATCACCTGACCTTCTGGGTCGGAAACGCCAAACAGGCGGCGTCCTATTACTGTAACAAGATGGGCTTCGAGCCGCTGGCGTACCGCGGTCTGGAGACGGGCAGCCGCGACGTGGTCTCGCACGCCGTCAAACAGGGCAAGATCGTCTACGTGTTCTCATCGGCCCTCAACCCTGGAAACAAAGAGATGGGAGATCATCTGGTGAAACACGGAGACGGCGTGAAGGACGTGGCGTTCACCGTGACAGACTGTGACTTCCTCGTGCAGAAAGCCAGAGAGCGAGGAGCGCTGATCGTCACGGAGCCGCACACGCTGGAGGATAAGAGCGGGAAGGTCCGGCTGGCCGTGCTGCAGACGTACGGAGACACCACGCACACGCTGGTGGAGCGCAGCGGCTACAGCGGCCTCTTCCTGCCGGGCTTCCACCCCCCGCTGTTCAAAGACCCGCTGCTGGCCACACTGCCAAGCGGAGAGCTGAACTTCATCGATCACGTGGTGGGAAACCAGCCGGAGGACCACATGGTCCCAGCGGTGGACTGGTATCAGAGGAACCTTCTGTTCCACCGGTTCTGGTCCGTGGACGACAAGCAGCTGCAGACGGAGTTCAGCGCGCTGCGCTCCATCGTCGTGGCCAATCACGAGGAGACGGTGAAGATGCCAATCAACGAGCCAGCCATGGGCAAGAGGAAGTCTCAGATACAGGAGTATGTGGAGTACTACGGAGGTCCAGGTGTGCAGCACATAGCCATGAACACATCAGATATCATCACTGCAATCCGTAACCTGAAGCAGCGAGGGATGGAGTTCATGAGAGTACCGGACACGTACTACGAGCAGCTGAGAGAAAACCTCCAACACTCAAAGGTCCAGATCTCAGAGGACCTGGATGTTCTGCAGGCGCTGAACATCTTGGTGGACTACGATGACGATGGGTATTTACTCCAGATCTTCACCAAGCCGGTTCAGGATCGTCCCACCGTGTTTTTGGAAGTGATTCAGAGACACAACCACCAGGGCTTTGGAGCAGGAAACTTCAAGTCTCTGTTTGCAGCCATCGAAGCCGATCAGAACCTTCGGGGAAATCTGACGGTCCTGACGCCCAACGGAGACTCAAACAACATGTGATCCCAGCGTTCAAACAACATGTGATCCCAGCGTTCAAACAACATGTGATCCCAGCGCTCACTTCTCTTtatacttgtataaatataccaATAACGTGCTACAGTTACAAATGCACAAAGCTTGTTTTTTTATCAAAGTTGTTACTCTTTAATGTCTCTGTGAATTGCATGTTTTATTACAACAGAGTAGTACTTTATTATAATCTCTCCTGATGTTTCTGGAAGACTTTGTCACAACTTTacaatgattttctttttttaatataaaatgttaaCAAGAAAAAAGACATTATTATGGGACAAGCTTGACTCAAGCAGAACATCGTTTAGAGCTTTCAGGAATGAAAACATTTAACTGTACACCTCTGTTATCCTTTGTTGTAACAGAAACATatctgtatgaatgtgtgaaaCTTCATAAACTGTGATGTGAAACCAAA

Function

symbol description
hpd Enables 4-hydroxyphenylpyruvate dioxygenase activity. Acts upstream of or within tyrosine catabolic process. Located in extracellular exosome. Implicated in hawkinsinuria and tyrosinemia type III.

NR:

description
PREDICTED: 4-hydroxyphenylpyruvate dioxygenase

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802496.1 True 1685 mRNA 0.50 14 42241736 42256884

Neighbor

gene id symbol gene type direction distance location
LOC120560212 NA coding downstream 29034 42209201 ~ 42212702 (-)
LOC120560222 NA coding downstream 62438 42175476 ~ 42179298 (-)
LOC120561110 LOC104936293,LOC104940908 coding downstream 105397 42111748 ~ 42136339 (-)
LOC120560203 NA coding downstream 147218 42078586 ~ 42094518 (-)
LOC120561108 NA coding downstream 194227 42034223 ~ 42047509 (-)
LOC120560191 NA coding upstream 5541 42262425 ~ 42271211 (-)
LOC120560234 plpp7,LOC107097912,LOC106531399,LOC103368069,LOC105917130,LOC101484670,LOC108248082 coding upstream 401472 42658356 ~ 42662019 (-)
LOC120560237 NA coding upstream 562990 42819874 ~ 42822645 (-)
LOC120561115 NA coding upstream 565521 42822405 ~ 42854342 (-)
LOC120560194 NA coding upstream 617013 42873897 ~ 42958273 (-)
G69110 NA non-coding downstream 18598 42209938 ~ 42223138 (-)
G68919 NA non-coding downstream 151207 42090073 ~ 42090529 (-)
G68925 NA non-coding downstream 151816 42044916 ~ 42089920 (-)
G68914 NA non-coding downstream 199072 42039860 ~ 42042664 (-)
G69094 NA non-coding downstream 202271 42038990 ~ 42039465 (-)
G69127 NA non-coding upstream 109145 42366029 ~ 42443845 (-)
G69129 NA non-coding upstream 139197 42396081 ~ 42413217 (-)
G69131 NA non-coding upstream 168868 42425752 ~ 42495934 (-)
G69144 NA non-coding upstream 258956 42515840 ~ 42516752 (-)
G69136 NA non-coding upstream 261287 42518171 ~ 42519895 (-)
G69105 NA other downstream 109155 42130611 ~ 42132581 (-)
G68921 NA other downstream 125475 42107630 ~ 42116261 (-)
G69104 NA other downstream 126977 42112792 ~ 42114759 (-)
rnf34a NA other downstream 134614 42098327 ~ 42107122 (-)
G68923 NA other downstream 312557 41928488 ~ 41929179 (-)
G69140 NA other upstream 240681 42497565 ~ 42536958 (-)
LOC120561114 NA other upstream 406479 42663363 ~ 42809622 (-)
G69229 chek2 other upstream 713200 42970084 ~ 43014065 (-)
chek2 chek2,LOC102215705 other upstream 745371 43002255 ~ 43025050 (-)
card9 card9,LOC108245830 other upstream 819346 43076230 ~ 43099165 (-)

Expression


Co-expression Network