rnf34a


Basic Information

Item Value
gene id rnf34a
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42098327 ~ 42107122 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802500.1
TGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACGGGAGAATGTGAGCAGTACTGTAACCTCAGATGTGGCCCCCCCCCCTACTCTCTGCAATGGCGCTGTGGCCGatggtGAGAAGAGTCCTCTGGCGCTCCATGACGACGGTCTGTGCCGTATCTGCATGGACGGTGTCATCGACTGCGTCCTGCTGGAATGCGGTCACATGGTCACCTGCACCAAGTGCGGCAAGAGGATGAACGAGTGTCCCATCTGCCGGCAGTACGTGGTCCGCGCCGTGCACGTCTTCAAGTCCTAacgctccacacacacacacacacacacacacacacacacacacacacacaaaactctgATCCTGTGGATGCTACAACTCTCACCTTCTTTGCACATTGAAGTATTATGAACAGAGTTATCTACGGGGTTACATATGTCTCATTATGTGTGAAcatctgtgtgtgaatgtgtaatcTGTAAATATTAACCCTGTGTTGTCTTCCCTGtcctcctttttgtttttctgggtcaaaatgtaaaaaacgaTTCCAACGTTTTGGTCGACATCttcgtcactttttttcaaagtttctgtcaatatttttctgcgctttttttacgttttttaaagattttacattttttgtcacttttttgacatttgattC
>XM_039802501.1
CTGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACGGGAGAATGTGAGCAGTACTGTAACCTCAGatggtGAGAAGAGTCCTCTGGCGCTCCATGACGACGGTCTGTGCCGTATCTGCATGGACGGTGTCATCGACTGCGTCCTGCTGGAATGCGGTCACATGGTCACCTGCACCAAGTGCGGCAAGAGGATGAACGAGTGTCCCATCTGCCGGCAGTACGTGGTCCGCGCCGTGCACGTCTTCAAGTCCTAacgctccacacacacacacacacacacacacacacacacacacacacacaaaactctgATCCTGTGGATGCTACAACTCTCACCTTCTTTGCACATTGAAGTATTATGAACAGAGTTATCTACGGGGTTACATATGTCTCATTATGTGTGAAcatctgtgtgtgaatgtgtaatcTGTAAATATTAACCCTGTGTTGTCTTCCCTGtcctcctttttgtttttctgggtcaaaatgtaaaaaacgaTTCCAACGTTTTGGTCGACATCttcgtcactttttttcaaagtttctgtcaatatttttctgcgctttttttacgttttttaaagattttacattttttgtcacttttttgacatttgattC
>XM_039802503.1
CTCTCTGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACCCCACAGTCACAGCTACGCTGTATATGAAGGCACAAAGTGCTGGAACAGTCATACCCCGGCTGCAATGAAGGGGAGAATGTGAGCAGTACTGTAACCTCAGGTAAGATACCACTTCCTGTTAGTAACCATAGAAACGTCAAACCTCTGC
>XM_039802504.1
CTCTCTGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACCCCACAGTCACAGCTACGCTGTATATGAAGGCACAAAGTGCTGGAACAGTCATACCCCGGCTGCAATGAAGGGGAGAATGTGAGCAGTACTGTAACCTCAGatggtGAGAAGAGTCCTCTGGCGCTCCATGACGACGGTCTGTGCCGTATCTGCATGGACGGTGTCATCGACTGCGTCCTGCTGGAATGCGGTCACATGGTCACCTGCACCA
>XR_005639437.1
GCTCTCTGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACGTACGTTACAAAGGGCCCAGTccgcaaatacacaaacaactTCCACAGACACCCagtatctgtctatctgtctatctgtctatctatctgtctgtctgtacgtTCATTACACACACGTGAGGTGTAGAATGAGATCCACAAATGTCCGTTGTAAAGTTGCAAATGTTAGGAAGATGTAATGTTTACAGTTACTAAAGTTACAACCGTTATGTTTACGTTCAGCCCACAGTCACAGCTACGCTGTATATGAAGGCACAAAGTGCTGGAACAGTCATACCCCGGCTGCAATGAAGGGGAGAATGTGAGCAGTACTGTAACCTCAG
>XR_005639438.1
CTCTCTGAAGGTTGATTAGAGTCAACGAGAAGGGGCGACAGAAGCGGTGGCAGCGGCAGAAGCGGTGGCAGCGGCAGCGGCAGAAGCGGTGCTCGGGTCTCGGCCGTTGCTCTCATCAGGACGCATTCAGGCAGTTAAAGaagtaatgatgatgatgatgctccATGTTGAAATGTTTGCCCCGCCAGTCTCCTCCTTCACGGTAGAAACGCCAGAGCTGCAATGAAGGCAGGAGCCTCGTCCATGTGGGCTTCATGTTGTGGTCTGCTGAATGACGTCATGGGCACCGGGGCGGTCAGAGGCCAGCAGCCGGGGTTCGGGGCCGGGGCGGGACCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACGTACCCCCCCAGCAGCTCAGGGAGCCCCAGTCCGGTGTGCAAGGCCTGCGGTCAGGCCTTCTCTGTCTTCAGGAGGAAGTATATGTGCGCTGACTGCAGGAAGAGTTTCTGCTGCGTGTGTTCGGAGCTCCAGGACGACCTCCGCCGGTGCGGCGTGTGCCGGTTGCTACGGGCGACGGCGTTCCAGCGCCCGCGGCTGATGCGTCTGCGGGTGCGAGAACTGCGACAGTATCTACTGCTGCGCAACGTCTCCACGGAAACCTGCAGGGAGAAGGAGGACCTGGTGGAGCTGGTGCTGTGTCACCACGGCAACCATGAGGAGGAGGACGTGGGCTCGCCGTCCGCCGCGCGGTCGGCCTCCGAGCTGTCGCCGCTCGCTGCCGCGCAGGGACAGCCAATCAGCCGCAGCGACAGCTCCGACACCAACCAGGACTCGGGTGATGCAACGTCTGAGTCTCTGCTGAACCTGGACGCCGGCGAACGCACTCCGGAGGTCAGTCCTCCGACGCGGCGCCGAGCGTCTCTGTCGGACGTGTCCAGTCTGCGAGACGTGGAGGATCTGTCCGTCCGCCAGCTGAAGGAGATCCTGGCCAGGAACTTCGTCAACTACTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTGGGCCGCCTGTACCGGGAGACCCAGGACAACCGGAGGTCACCCCACAGTCACAGCTACGCTGTATATGAAGGCACAAAGTGCTGGAACAGTCATACCCCGGCTGCAATGAAGGGGAGAATGTGAGCAGTACTGTAACCTCAGATGTGGCCCCCCCCCCTACTCTCTGCAATGGCGCTGTGGCCGatggtGAGAAGAGTCCTCTGGCGCTCCATGACGACGGTCTGTGCCGTATCTGCATGGACGGTGTCATCGACTGCGTCCTGCTGGAATGCGGTCACA

Function

NR:

description
E3 ubiquitin-protein ligase RNF34-like isoform X4

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802500.1 True 1679 mRNA 0.57 8 42098327 42107116
XM_039802501.1 False 1638 mRNA 0.57 7 42098327 42107117
XM_039802503.1 False 1206 mRNA 0.62 7 42100327 42107121
XM_039802504.1 False 1269 mRNA 0.63 8 42098771 42107121
XR_005639437.1 False 1381 transcript 0.59 6 42100375 42107122
XR_005639438.1 False 1296 transcript 0.63 9 42098786 42107121

Neighbor

gene id symbol gene type direction distance location
LOC120560203 NA coding downstream 3809 42078586 ~ 42094518 (-)
LOC120561108 NA coding downstream 50818 42034223 ~ 42047509 (-)
LOC120561107 rictor coding downstream 75970 41938981 ~ 42022357 (-)
LOC120561104 NA coding downstream 216314 41867239 ~ 41882013 (-)
LOC120561103 NA coding downstream 239829 41837626 ~ 41858498 (-)
LOC120561110 LOC104936293,LOC104940908 coding upstream 4626 42111748 ~ 42136339 (-)
LOC120560222 NA coding upstream 68354 42175476 ~ 42179298 (-)
LOC120560212 NA coding upstream 102079 42209201 ~ 42212702 (-)
hpdb hpd,LOC103375816,LOC107092762,LOC101157460,LOC104940904,LOC106516708 coding upstream 134614 42241736 ~ 42256884 (-)
LOC120560191 NA coding upstream 155303 42262425 ~ 42271211 (-)
G68919 NA non-coding downstream 7798 42090073 ~ 42090529 (-)
G68925 NA non-coding downstream 8407 42044916 ~ 42089920 (-)
G68914 NA non-coding downstream 55663 42039860 ~ 42042664 (-)
G69094 NA non-coding downstream 58862 42038990 ~ 42039465 (-)
G68920 NA non-coding downstream 89989 41943696 ~ 42008338 (-)
G69110 NA non-coding upstream 102816 42209938 ~ 42223138 (-)
G69127 NA non-coding upstream 258907 42366029 ~ 42443845 (-)
G69129 NA non-coding upstream 288959 42396081 ~ 42413217 (-)
G69131 NA non-coding upstream 318630 42425752 ~ 42495934 (-)
G69144 NA non-coding upstream 408718 42515840 ~ 42516752 (-)
G68883 NA other downstream 24347 41836547 ~ 42073980 (-)
G68923 NA other downstream 169148 41928488 ~ 41929179 (-)
G68897 NA other downstream 269194 41752536 ~ 41829133 (-)
G68907 NA other downstream 316165 41754872 ~ 41782162 (-)
LOC120560231 NA other downstream 696426 41319196 ~ 41401901 (-)
G68921 NA other upstream 508 42107630 ~ 42116261 (-)
G69104 NA other upstream 5670 42112792 ~ 42114759 (-)
G69105 NA other upstream 23489 42130611 ~ 42132581 (-)
G69140 NA other upstream 390443 42497565 ~ 42536958 (-)
LOC120561114 NA other upstream 556241 42663363 ~ 42809622 (-)

Expression


Co-expression Network