foxn4 (foxn4)


Basic Information

Item Value
gene id foxn4
gene name foxn4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18685461 ~ 18692897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802887.1
AGCAGGACGCGGCCACAGCGGCGGGAAGCAAATTATCTACAAGCACTTCccttaaaaaaaagttcacaCTCACATACAAAGATGCCACCACAAGTAGCGACTCACACCGTCTTAGACCTGATCGAGGGAACTTACTTGGAATAACCTGACAGGAGAAACGGATATTTCATGTTAATTCTTTCATTACGCTTTTGTTAAATTTTTAATGTTGCTTTTAATGCGCTTataggctgttttttttgttgttgcggTAAATAGCCTCAACATGATTTGGGCCTGAACTTATGTagctattttgtgttttattaagACGCACCTGCGTGCCACTGGAGGAACAAGCGCACAGTACGGTGTAAGGCAGACAGAATAACTTACTTTATATATAATgttatctttttaataatcatCTTATAAGAGGACTACAATGTCTGGATGGAGTATGACCTTACTTTAAATACAACAAACGTGTTGGATGCAGTGGAAGAGCGCGCCACGACCGCACTGTGACACTTAAAGTCCCCGCCATCAAAAcggagagaaaaataaaatctcGACATCGCTACTCCTACACTTGCTGACTGAAGTGTGGATGTTGTCGGGACTGTTAACAGGCACTGCATTAACAGCAGCTGTCAAACTCATGGGATCCTCCTGCCCCCCGGGCGACTGGGAGCTCTGTTGAAGTCTTCACTGCGCATGTCAGAGCGCTGGACAGCTCCAGAGAGGGAAATTTAAAAACGGTTTTTGGAGAATCAAATGcaacacagtgaaatacagtacaGGGGCTCGCGACCAGCTGACACATTCTTCAGTATCATCCAAAACAGTGGTATCACATATCCCAGGAAATGATAGAAGGTGGAATAACATCCAGGATGTCAGGAATAATTGAGAATGCTGGGCATCATCCGTCTCCACAGGACTACAGGCTTCTGACCACGGACCCCTCCCAGCTGAGGGAGGAGGACCTCCCTGGGGACCTGCAGTCTCTGTCATGGCTCACCTCTGTGGATGTGCCCCGACTACAGCAGATGGCTGATAGCCGAGGCCACAGTAACGGGCCCTCCCAGGGCAGCTTGTTGGAGCAACAGACAGCTCAGCTGAGCAACATGACTGCGATGACAGCGGGTCAAGGCTCCATGCTCCACCTCCAGAGCAACATGCAGCACAGCCCTCTGGGAATCAGCATCATCAACACCCACAGCGGAAGTATGTCTCCATTCTCCATGAATGGGCTGCCCTCTCCGAGTTACCAGTGCCCTACCTCAGTCTACCAGCCTACACACCAGCAGGTGTACTCTCTAACCCAAACTGGACAACAGTGTTCAACTGGTGGGCTTTATAGCAATGTATCTTTCAACAACCAAAGTCTATTCACACAACCTCGTCTGGCTCCACAAGAGCAGGAGCTGCAGCCCAAGTCTTTCCCCAAGCCAATCTACTCCTACAGctgtttGATTGCCATGGCTCTGAAGAACAGCAAAACTGGCAGCCTCCCTGTCAGTGAGATCTATAGCTTTATGAAGGAACACTTCCCTTATTTCAAGACTGCACCTGATGGATGGAAGAACTCAGTCAGACACAACCTGTCCTTAAACAAATGCTTTGAGAAAGTGGAGAACAAGACGAGCAGCTCGTCCCGTAAGGGCTGTCTGTGGGCGCTGAACCCTGCCAAAATTGACAAGATGGAGGAAGAGATGCAGAAGTGGAAACGCAAGGACCTGCCAGCCATCCGCCGCAGCATGGCTAACCCTGATGAGTTGGACAAATTGATCACAGACCGCCCAGAGAACTGCAGACGTAAAGCTTTAGAGCCCGGCATGACCCGTCTGCCCAGCTGTCCCACTGGCCTTCCGCTTCCCGTCCCAGCACAGATGCAGCCTCAGCCAATAGTCACACTGTCCCTGCCCTGTTTACCTATGCACCAGCACCACCAGCTTCAGGCACAGCTCCACGCTCAGGCCCGCCTGGCCCCCATGTCCCCTGCTCCGGCCCAGACACCTCCACTCCACACGGTCCCTGACCTTTCCCACAGTCCACTCACCCAGCACCACAGCAAGCTGCCGGACGATTTCTACAGTGTGCACggggatacacacacagaggtggATGCACTGGACCCGAGCATCATGGACTTTGCCCTTCAAGGTAATCTGTGGGAGGAAATGAAGGACGACAGCTTTAACCTGGATGCTTTGGGTACCTTCAGTAACTCCCCCCTCCGACTATCAGACTGTGACTTGGGAACAGCCCACCTGACTCCTGTCTCCACTGGAACGAACCTGCAGCTGTCAGATGTGCAAGTGACGGGTCTTTACACCTCCTACACCTCCCAGGATCACCTGTCTTCCCAGTACATGGGCGCACCAGCCAACAGCAAGCCCATCGCCCTGTTATAAAACAGTCTCCGACCTGATTCATTCAGCTGTCTATGGATATATGTGGACGTCAGCTGAAGAAGGCTTAAGGCAAAGTCTGAATTGTGGTTTCTTACAAATCACACTGCTTTCCTACGGTCAGCTGGAAACTACTTGGAGAAGGATGTTTAAAAATCATTTCATTCTCATTAAGAACTAAAACTGCTGATAAATAAAGAGGTGGCTGTAAGAAAAAGTATGTAAGACTTAAAATATCTAGCTTTGCCAAGCAAAGACTCAAAGCTTGTATGAGTACAAAGACTCTATGTGAAGATGACCGTGTGAGTTAACAACCGCCAGTTTTTATTGTGTTCACTCGCGTTTTAAAGCCCTACCATCCTGTAGCTCCCTGTCTCTTGTCTGTTGTATTGTGGTAGACATTATTgctgtgatgttttatttatatttatgaaaAGGCAGCTAGAGAAGGTGATGACTCTATCAATCTTTTGCTGTATATATTTGAATGTTTCGAACTGCTATTGCCACAGAAAAGCTTTCTTTCGACTGTATTTACCCACTTCTTTCCAAAATGCCGATGTGTGCCAACACTTTGAGTAATCCAGATTTTAAACATTATTCTTTTACGCAATGTGATTAGCATGTCTCAAAGTCAGATGTATATTATGTTCATTAACTTGATCATAATACAAATCAAATGGGTGAATAAAAGAAGTTTGTTTTgccaaatatat

Function

symbol description
foxn4 Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in atrioventricular canal development and heart looping. Acts upstream of or within heart valve development; positive regulation of transcription, DNA-templated; and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in several structures, including forebrain neural keel; nervous system; optic vesicle; pericardial region; and presumptive neural retina. Orthologous to human FOXN4 (forkhead box N4).

NR:

description
forkhead box protein N4-like

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802887.1 True 3112 mRNA 0.47 10 18685461 18692897

Neighbor

gene id symbol gene type direction distance location
pole pole,LOC102794752 coding downstream 25632 18642871 ~ 18659829 (-)
pes pes1,LOC101476782,LOC102794482 coding downstream 48420 18629967 ~ 18637041 (-)
gal3st1a gal3st1 coding downstream 56986 18622821 ~ 18628475 (-)
lztr1 lztr1 coding downstream 64307 18613470 ~ 18621154 (-)
cldn26 LOC103357467,LOC104947832 coding downstream 73767 18610705 ~ 18611694 (-)
kctd10 kctd10 coding upstream 22524 18715421 ~ 18720543 (-)
trpv4 trpv4 coding upstream 154840 18847737 ~ 18861234 (-)
gltpa gltp,LOC102799183 coding upstream 169512 18862409 ~ 18868686 (-)
git2a git2 coding upstream 185265 18878162 ~ 18896234 (-)
slc6a4b LOC106918286,LOC103470329,LOC103142877,LOC103353553,LOC107393971,LOC104942803 coding upstream 217368 18910265 ~ 18918557 (-)
G62625 NA non-coding downstream 145446 18539126 ~ 18540015 (-)
G62630 NA non-coding downstream 150180 18534933 ~ 18535281 (-)
G62629 NA non-coding downstream 163586 18521564 ~ 18521875 (-)
G62586 plekha2 non-coding downstream 287515 18394836 ~ 18397946 (-)
G62571 NA non-coding downstream 327708 18355242 ~ 18357753 (-)
G62733 NA non-coding upstream 54296 18747193 ~ 18748609 (-)
G62771 NA non-coding upstream 144077 18836974 ~ 18845777 (-)
G62772 NA non-coding upstream 212422 18905319 ~ 18906567 (-)
G62817 NA non-coding upstream 264360 18957257 ~ 18961477 (-)
G62872 NA non-coding upstream 394866 19087763 ~ 19088373 (-)
G62626 LOC103357464 other downstream 173200 18510155 ~ 18512261 (-)
zgc:158398 NA other downstream 193054 18488162 ~ 18492407 (-)
iqcd NA other downstream 242443 18437676 ~ 18443018 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other downstream 299192 18383005 ~ 18386269 (-)
G62580 tacc1,LOC101470878,LOC102206806 other downstream 304959 18377602 ~ 18380502 (-)
mmab mmab other upstream 42011 18734908 ~ 18737406 (-)
ficd ficd other upstream 407347 19100244 ~ 19102474 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other upstream 486608 19179505 ~ 19237086 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other upstream 856554 19549451 ~ 19554908 (-)
LOC120561342 NA other upstream 1018551 19711448 ~ 19731573 (-)

Expression


Co-expression Network