LOC120561110 (LOC104936293,LOC104940908)


Basic Information

Item Value
gene id LOC120561110
gene name LOC104936293,LOC104940908
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42111748 ~ 42136339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804062.1
AGAGAGGAGCCGCGGCTCGTTCCGCCATGTTGGTATTCTCCGGTGTTAGTGAacgatgagagagagagagagcggccaTGGCCTTGTCACTGAGCGGAGACGAAGAGGAATATGATTCCGAGGGCGAGCAGCAGCGGGCGGCCAACCGGCCGAAGCCGAAGGCGGGGCCATCGGCGGCGGTGAAGCTGCCGTCCAACCGCAGCGCGTCGGGAGCCCGGCGGCGGCGGACGCGATGCAGGAAGTGCGAGGCGTGCCTCCGCACCGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTCGGAGGACCGGGACGCATGAAGCAGTCCTGCATCATGAGGCAGTGCATCGCTcCGGTGCTGCCTCACACGgcggtgtgtgtggtgtgcaaaGAGGCGGGAAAAGAGGACACGCTGGAGGACGAGGACGACAAGTTCAACTTCATGTTGATGGAGTGCTCCATCTGCAACGAGATCGTCCACCCCAACTGTctcaagGTGAGCGATGCGTCCGGAGTGGTCAACGATGAGCTCCCTAACTGCTGGGAGTGTCCCAAATGCAACCACGCGGGGAAGAGTGGGAAACAAAAACGGGGTCCAGGCTTCAAGTACGCGTCCAACCTCCCGGGCTCTCTGCTGCGGGAGCAGAAGCCCGCCAAGGAGGACGCCGCGGACGCCACGGCCGCCACGGCCGCCGCCACGGCCGTGTCTGCAGCGCGGCGCCGTCCGGAGAGAGACGAGACGCCGCGGTCCAGAGGCGAGGACCCTCAGCCGCGGCCCCAGCCGCTAGCGCCGCTGCTACCGCTACCGCTACCGCTGCTGTCCCCGCGGCCGCGCCCCGAAGACAagctgaggaagaagaggaagctgTTCGACGATGACGAGGAAGAGGAGCTCAGCGGGAGGAAGAAGGAGAAGTGTGACGAGCCGTATTTCTCCAAACTTCTGCACCAGATCAAGACCGAAGAGGAGGACCAGGACGCCGACGAGGAAGAGGACGGAGACGAAGGGCGGGAGCGCCGCTTCCGCAGCGGCGCGGAGACGAACGGGAGCCTCGGAGACGAAGCCGAACCGGACGACAAGGACTCGAGGAGCGCCCTGCTGCACGCGTGCGTCCGAGCGGCGGCGGCGGTCGGCGACAGCGACCAATCGCTGTGCAGCTCGCCGCGGGCCGGCCCCAGCAGCGAGGCTGGCAGCGAGACGCAGGAGAGAGGCCCGCCGCGCCCAAAGGCTCGCCGCAAACGGCGGTTAGCCAACCGCGAGCTGAGCCGCGAGCTGAGCCGAGCGCTGAACTCAGAGATCCAGGAGACGGAGAACTGCCTCGCCAACGAGAACCGGCAGCCGCTCAAAGTGGAGCCGGAGACGGAGAACGGAGAGACAcacaggttacacacacacacacacacacacacacagacacaggttacacacacaACCTGGAACAGATgGTGCTGTGATAAGAGACTGTGGACTAAGATCGATCTGAACCGCTGCACGTCCATCACGCCTCTCATGCTCAGCGGGATCATCCGGCGCCAGCCGCTCGCTCTGGATCTCAGCTGGACCAACATCTCCAAAAAACAGCTGAGCTGGCTCATCAACAGACTGCCAGGTCTGCGGGTGTTGAGGTTGTCGGGCTGCTCCTGGGCCGCTGTGTCGGCGCTCTGCACCTCCAGCTGTCCCCTGCTGTGCTCGCTGGACGTCCAGTGGGTGGAGGGGCTCAAAGACGCTCAGATGAGAGACCTACTGTCCCCGCCCACAGACAACAGACCAGGTCAGCTGGATAACCGCTGCAAGCTGCGTAACGTGCGGGACCTTCGTCTCGCCGGGCTGGACATCACGGACACGTCCCTGCGTCTCATCTGCCGCCAGATGGCGTCTCTGTCCacgctggacctgagctactgCAACCACATCAACGACCAGTCGGTCAACCTGCTGACCGCCGCCGGGACCACCACCAGAGACTCGCTGATGGACATCAACCTGTCGGTGTGTAACCGCGTCACGGACCACTCCCTGACCTTCTTCAAGCGCTGCGGCAGCATCTGTCAGATCGACCTCCGCTTCTGTAAGCAGGTGACGCGCACGGCGTGCGAGCGCTTCATCGCCGAGATGTCCGTGAGCGTCCCGTTCAGACTCACGGAGGACAAACTGCTGCAGAAGACCTGCTAgtccccacgcacacacacacacacacacacaacgcacacacacacacacacacacacacacacacacacacacacacacacctccgcaCTTACAGTATATTATGGGATGGGATGTGTCTCATTTTACCAGGGCTGTTCTCAATTGAAGAGATTCTGAGTCGACTATCACTCAGTCAACTGTCTGACTGAtccattagttgatttaatcgacagatctgtaaatcagagtttctccactaagagtcgtgttaaaagcaccactttaattcttgtgtttaccagagatgagctcgtacggtTCTTGG

Function

NR:

description
PREDICTED: lysine-specific demethylase 2B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804062.1 True 2481 mRNA 0.61 11 42111748 42136339

Neighbor

gene id symbol gene type direction distance location
LOC120560203 NA coding downstream 17230 42078586 ~ 42094518 (-)
LOC120561108 NA coding downstream 64239 42034223 ~ 42047509 (-)
LOC120561107 rictor coding downstream 89391 41938981 ~ 42022357 (-)
LOC120561104 NA coding downstream 229735 41867239 ~ 41882013 (-)
LOC120561103 NA coding downstream 253250 41837626 ~ 41858498 (-)
LOC120560222 NA coding upstream 39137 42175476 ~ 42179298 (-)
LOC120560212 NA coding upstream 72862 42209201 ~ 42212702 (-)
hpdb hpd,LOC103375816,LOC107092762,LOC101157460,LOC104940904,LOC106516708 coding upstream 105397 42241736 ~ 42256884 (-)
LOC120560191 NA coding upstream 126086 42262425 ~ 42271211 (-)
LOC120560234 plpp7,LOC107097912,LOC106531399,LOC103368069,LOC105917130,LOC101484670,LOC108248082 coding upstream 522017 42658356 ~ 42662019 (-)
G68919 NA non-coding downstream 21219 42090073 ~ 42090529 (-)
G68925 NA non-coding downstream 21828 42044916 ~ 42089920 (-)
G68914 NA non-coding downstream 69084 42039860 ~ 42042664 (-)
G69094 NA non-coding downstream 72283 42038990 ~ 42039465 (-)
G68915 NA non-coding downstream 118257 41988436 ~ 41993491 (-)
G69110 NA non-coding upstream 73599 42209938 ~ 42223138 (-)
G69127 NA non-coding upstream 229690 42366029 ~ 42443845 (-)
G69129 NA non-coding upstream 259742 42396081 ~ 42413217 (-)
G69131 NA non-coding upstream 289413 42425752 ~ 42495934 (-)
G69144 NA non-coding upstream 379501 42515840 ~ 42516752 (-)
rnf34a NA other downstream 4626 42098327 ~ 42107122 (-)
G68883 NA other downstream 37768 41836547 ~ 42073980 (-)
G68923 NA other downstream 182569 41928488 ~ 41929179 (-)
G68897 NA other downstream 282615 41752536 ~ 41829133 (-)
G68907 NA other downstream 329586 41754872 ~ 41782162 (-)
G69140 NA other upstream 361226 42497565 ~ 42536958 (-)
LOC120561114 NA other upstream 527024 42663363 ~ 42809622 (-)
G69229 chek2 other upstream 833745 42970084 ~ 43014065 (-)
chek2 chek2,LOC102215705 other upstream 865916 43002255 ~ 43025050 (-)
card9 card9,LOC108245830 other upstream 939891 43076230 ~ 43099165 (-)

Expression


Co-expression Network