sdf2l1 (sdf2l1,LOC106531766,LOC106570867)


Basic Information

Item Value
gene id sdf2l1
gene name sdf2l1,LOC106531766,LOC106570867
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11160449 ~ 11169327 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804329.1
gtgattggttgacagTATATTACATCCATGGTTGACAGCAGTAACGTTTGAAAGGGACTGAATTTGCTGTTCATCTTGACAGTGTCAGAGAACAAAGACACAAATATGGAGATAATACACGCTgtccatgtttttgtcaaatCACTGCTGTTTCTGCTGCTGTGGTCAAACTGTGAAGGAAGAGAATCGGAGCACAACCATGTTACCTGCGGCTCACTGGTCAAACTGCTCAACACCAGACATAACGTCCGCCTGCATTCCCACGATGTCAAATATGGCTCAGgCAGTGGACAGCAGTCTGTAACTGGAGTGGAGAACGCAGATGATGCCAACAGTTATTGGCAGATTCGTGGGAAGCCCAACCGTCCTTGTCAACGCGGGGCAGCCATCAAGTGTGGTCAGGCCATACGCATCACACACATGAAGACCGGTCGAAACCTCCACACACACCACTTCAGCTCACCGCTGTCTAATAACCAGGAAGTCAGTGCCTTTGGAGAGAATGGCGAGGGTGACGACCTGGACGTGTGGACAGTGCAGTGTGAAGGCATCCACTGGGAGCGCGATGAGGATGTGCGCTTCAAACACGTTGGCACTGATGTCTTCCTGAGCATAACAGGCGAGCAGTACGGCCACCCCATCCGCAGCCAGCGGGAGGTGCATGGCATGAGCACTCCTAACCAGCACAACTGGTGGCGCTCCATGGAGGGTGTCTTCCTCCAGCCCAGCCAGGTGCCGCTGCGCCACGATGAGCTCTGACATCATCACTGAGAGGGGCAAAGCATGTTGATTCCTGTTCGTGTGGCGCTTTTAAAAATCTCCTGGACCAAATGATGTCGTGTGAATTATGTAGAATATTTGACTCATCTCTTTACATGTGAAGCACTCAGGGTGGTCTGAGACAAGGGCggtaatgttatttttgaataaAATCAGTGATACTCTATGTAGTGTAGCCACATGGTCTATATATCGGTTTACTCCTTGGATAATTTCGTAAGGGAGAAAAtgctttttgtaaaaaaaaaaaaggcacaacaTTAACATATAACATTAATTAATAACATTAACCATAGATCATACATATTTGATTAGTCAATTGATAGAACATTTATCAgcaaccattaaaaaaaatgtattacctGTAAAAGTAAATTATCAAGCATAATACCAAACATTGGTGCTTGTTTGAAGATTGTTGGTTGGACAGAAAAAGCTGTTCATGTGACATCTTCCAATTGTGAAGGGAAGTCAGCTTGATGTGTCTTTCATCTGCTGTTTCCTTGGCAAACCACTGCGTTTTAGGTGGTCAACCTTTGCCTTTGTGCTTCTGCAGAAGAGCTTGGGAAGAACATTTGGAAACACGTGTCTGCCTTGTAATTTCTGCCTGTAAGAGACCCTTCCTGACACACCTTGTGTCTTGTTGCTAAACTGACTCCCCTGGTGTAAGATCTATTTTAGATTAAACTGTCTTCAGCAATCTCTCCTTTTAGTATGGCTGTTCCTCACCCAGTTTTATTCCTTCTACACCATTTCTGTTAATGATTGTGGTTCAAACTACATATTATGTTGTTGATCATTAATATCTGTTTGgtgttaatgtaatgtttagTCATGCACTgggctatatactgtatatattgtttATTTGGAAAGCGGTCTGTTACTTTGTTACTGTCTTTCTTTAACAGCATACAAATATCTCACTATTTGCAAAAGGAATGTTTTGAAAGCATTTCACTTCCATAAGAGAAAATCGATGCTGCTTTGACAGAGAACTAAAAGTTCAAATCTACACTTCCTACAATGCAGCTTGATAACTTTCATAGGACCCTCCCAGCTTGGTGAATGGGCACATCTTTCAAACTCCACACCCATAGTTTGTATTTGCAGGCTCTTTGTAATCTCCAAGTCCAAGCGGAGATAACCCTGAttgtcatcagggttatctcCGCTTGGACTTATTGCTATTGGATATTGCTATAACATCCTCAGGGGTTATTTTCTCAGAATTGACGAAGCTCCTACTGAGccacaaattataaaaaaaatgtttacaggCTGAGTAGTGCTAAACGTGATAAGTAAACAGACCTTGTGTGCTAAATCAGTGGAGTGCCTGTATAGTGAATCAACCAATTAAATCATAATCACAGGAATAATGAATGACTGGTTGGTTTCTGGGGCCCTAGGCAAAACATAATAAAGCTGTTATCTCAAATCAGCTGGGTGCCCCAGGCCCCCCTAGTGGTTTCATATGTCCTTGAAAAGTAATTTGAACTCTGTTCATGTAATGTCAAATTCTAAAATAAAGACTAATGAGTCAAAGTA

Function

symbol description
sdf2l1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1).

NR:

description
stromal cell-derived factor 2-like protein 1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804329.1 True 2331 mRNA 0.42 3 11160449 11169327

Neighbor

gene id symbol gene type direction distance location
top3b top3b coding downstream 68487 10986105 ~ 11091962 (-)
ppm1f ppm1f coding downstream 192245 10807831 ~ 10968204 (-)
tm2d2 tm2d2 coding downstream 455756 10637048 ~ 10704693 (-)
hdr NA coding downstream 1049980 10089296 ~ 10110469 (-)
LOC120559983 LOC104937676 coding downstream 1085246 10069711 ~ 10075203 (-)
LOC120561251 NA coding upstream 182527 11351854 ~ 11354906 (-)
npdc1b npdc1 coding upstream 439292 11608619 ~ 11639438 (-)
niban2b LOC106585213,LOC107560233,LOC107715759 coding upstream 472475 11641802 ~ 11715948 (-)
noxa1 LOC103359690 coding upstream 912172 12081499 ~ 12116241 (-)
man1b1b LOC103359688 coding upstream 989306 12158633 ~ 12220357 (-)
LOC120560099 NA non-coding downstream 37541 11122553 ~ 11122908 (-)
G60683 NA non-coding downstream 39647 11119850 ~ 11120802 (-)
G60680 NA non-coding downstream 47790 11107551 ~ 11112659 (-)
G60655 NA non-coding downstream 179693 10980417 ~ 10980756 (-)
G60654 NA non-coding downstream 181119 10978975 ~ 10979330 (-)
G60721 NA non-coding upstream 38281 11207608 ~ 11207913 (-)
G60805 NA non-coding upstream 321994 11491321 ~ 11492157 (-)
G60813 NA non-coding upstream 378733 11548060 ~ 11550747 (-)
G60817 fut7,LOC103353858 non-coding upstream 402625 11571952 ~ 11576716 (-)
G60857 NA non-coding upstream 554522 11723849 ~ 11724069 (-)
unc5db unc5d other downstream 641482 10122152 ~ 10518967 (-)
tacr1a tacr1,LOC102799894,LOC100703444,LOC102196095 other downstream 2433006 8643403 ~ 8727443 (-)
G60145 NA other downstream 2757883 8401022 ~ 8402566 (-)
anapc7 anapc7 other downstream 3273024 7877399 ~ 7887425 (-)
specc1la specc1l other downstream 3394437 7727560 ~ 7766012 (-)
G60715 NA other upstream 19815 11189142 ~ 11189741 (-)
abca2 abca2 other upstream 116058 11285385 ~ 11593660 (-)
LOC120561001 whrn,LOC102797690 other upstream 732323 11901650 ~ 12061646 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other upstream 1124380 12293707 ~ 12555285 (-)
G61264 NA other upstream 2419712 13589039 ~ 13589332 (-)

Expression


Co-expression Network