ciao1 (ciao1)


Basic Information

Item Value
gene id ciao1
gene name ciao1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40642729 ~ 40651595 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804396.1
TGCAAATTCGCGCACCGGATAAACAAAGATGGCGGTATTTCCTTCATGATTGCTTTTGTGAACTGTTGTAGTTTGTCCTTTGGTGCGAATACGTCCCGTTTTCTCTTCCAGGTGACAAGACAGCAGCACAGTTTGTGTGTTAGAGTGCGTGGCGGTGTTTGTTAACGGATTTAAACGGTCAGCAGCGAGACTAACGGTTTTCAACGGTCAGCAGTAACTGACAGCAGCGGGACTCAGGGGGATACAGCTAGGGCAACGACAGACCGACATGAAGGAAGCTCTGACCCGGGTCCAGACACTCAGCGCGCACCCGGACTCCCGGTGCTGGTTCGTCAGCTGGAACCCGACCGGCACGCTGCTGGCTTCATGCGGGGGAGACAAGGCCATCCGGATCTGGGGGCGAGAGGGCGACTCATGGATCTGTAAGAGCGTTCTTCAGGAAGGACACCAGCGCACCGTGAGGAAGGTCGCGTGGTCGCCCTGTGGGAACTATCTGGCCTCCGCCAGCTTCGACGCCACCACGTGCATCTGGAAAAAGAAGAACGATGATTTTGAGAGTTTGACGGTGTTGGAGGGACATGAAAACGAGGTCAAGTGTGTGGCGTGGGCGCCGTCTGGGAATCTGCTGGCGACCTGCAGCCGAGACAAGAGCGTCTGGGTCTGGGAAGTGGACGAGGAGGACGAGTACGAGTGCGTTACCGTGGTGAACGCTCACACACAAGACGTCAAGCACATCGCGTGGCACCCGACCCAGGAGctcctGGCTTCAGCCAGCTATGACAACAACGTGTGTATTTACAAGGAGGAGGACGACGACTGGGAGCGCCGCGCCACGCTGACGGGACACTCGTCCACCGTTTGGAGTCTGGCGTTCGACGCGGCGGGGGAGAGGCTGGCGTCCTGCAGCGACGACCGCACCGTCAAGATCTGGAAGGAGAGTCCCAGTGGGGGAGGACAGGGAGACTTGTCGTGGAAGTGTGTGTGCACTCTGTCTGGATACCATGGACGAACCGTGTACGATGTCGCCTGGTGTCGGCTGACCGGCGCCCTGGCGACGGCGTGCGGCGACGACACCGTGCGGGTGTTTAAGGAGGACGAGACGGccgaccccgagcagccggtgTTCTCGCTGGCGGCGCAGGCGCCCAGAGCTCACAGCCAGGACGTCAACTGCGTCGCCTGGAGCCCGACGGAGGCGGGACTGCTGGCGTCCTGCAGCGACGACGGCGACATCACCATCTGGAGGTTTCACCAGGAGACCTGAACGCTGAGCTACACGACCacacgttacacacacacacacacacacacacgagacctGAACGCTGAGCTACACGACCACacgttacacaaacacacacacacacacacgaga
>XM_039804397.1
TGCAAATTCGCGCACCGGATAAACAAAGATGGCGGTATTTCCTTCATGATTGCTTTTGTGAACTGTTGTAGTTTGTCCTTTGGTGCGAATACGTCCCGTTTTCTCTTCCAGGTGACAAGACAGCAGCACAGTTTGTGTGTTAGAGTGCGTGGCGGTGTTTGTTAACGGATTTAAACGGTCAGCAGCGAGACTAACGGTTTTCAACGGTCAGCAGTAACTGACAGCAGCGGGACTCAGGGGGATACAGCTAGGGCAACGACAGACCGACATGAAGGAAGCTCTGACCCGGGTCCAGACACTCAGCGCGCACCCGGACTCCCGGTGCTGGTTCGTCAGCTGGAACCCGACCGGCACGCTGCTGGCTTCATGCGGGGGAGACAAGGCCATCCGGATCTGGGGGCGAGAGGGCGACTCATGGATCTGTAAGAGCGTTCTTCAGGAAGGACACCAGCGCACCGTGAGGAAGGTCGCGTGGTCGCCCTGTGGGAACTATCTGGCCTCCGCCAGCTTCGACGCCACCACGTGCATCTGGAAAAAGAAGAACGATGATTTTGAGAGTTTGACGGTGTTGGAGGGACATGAAAACGAGGTCAAGTGTGTGGCGTGGGCGCCGTCTGGGAATCTGCTGGCGACCTGCAGCCGAGACAAGAGCGTCTGGGTCTGGGAAGTGGACGAGGAGGACGAGTACGAGTGCGTTACCGTGGTGAACGCTCACACACAAGACGTCAAGCACATCGCGTGGCACCCGACCCAGGAGctcctGGCTTCAGCCAGCTATGACAACAACGTGTGTATTTACAAGGAGGAGGACGACGACTGGGAGCGCCGCGCCACGCTGACGGGACACTCGTCCACCGTTTGGAGTCTGGCGTTCGACGCGGCGGGGGAGAGGCTGGCGTCCTGCAGCGACGACCGCACCGTCAAGATCTGGAAGGAGAGTCCCAGTGGGGGAGGACAGGGAGACTTGTCGTGGAAGTGTGTGTGCACTCTGTCTGGATACCATGGACGAACCGTGTACGATGTCGCCTGGTGTCGGCTGACCGGCGCCCTGGCGACGGCGTGCGGCGACGACACCGTGCGGGTGTTTAAGGAGGACGAGACGGccgaccccgagcagccggtgTTCTCGCTGGCGGCGCAGGCGCCCAGAGCTCACAGCCAGGACGTCAACTGCGTCGCCTGGAGCCCGACGGAGGCGGGACTGCTGGCGTCCTGCAGCGACGACGGCGACATCACCATCTGGAGGTTTCACCAGgagaCCTGAACGCTGAGCTACACGACCacacgttacacacacacacacaacacacaggagACCTGAACGCTG
>XM_039804398.1
TGCAAATTCGCGCACCGGATAAACAAAGATGGCGGTATTTCCTTCATGATTGCTTTTGTGAACTGTTGTAGTTTGTCCTTTGGTGCGAATACGTCCCGTTTTCTCTTCCAGGTGACAAGACAGCAGCACAGTTTGTGTGTTAGAGTGCGTGGCGGTGTTTGTTAACGGATTTAAACGGTCAGCAGCGAGACTAACGGTTTTCAACGGTCAGCAGTAACTGACAGCAGCGGGACTCAGGGGGATACAGCTAGGGCAACGACAGACCGACATGAAGGAAGCTCTGACCCGGGTCCAGACACTCAGCGCGCACCCGGACTCCCGGTGCTGGTTCGTCAGCTGGAACCCGACCGGCACGCTGCTGGCTTCATGCGGGGGAGACAAGGCCATCCGGATCTGGGGGCGAGAGGGCGACTCATGGATCTGTAAGAGCGTTCTTCAGGAAGGACACCAGCGCACCGTGAGGAAGGTCGCGTGGTCGCCCTGTGGGAACTATCTGGCCTCCGCCAGCTTCGACGCCACCACGTGCATCTGGAAAAAGAAGAACGATGATTTTGAGAGTTTGACGGTGTTGGAGGGACATGAAAACGAGGTCAAGTGTGTGGCGTGGGCGCCGTCTGGGAATCTGCTGGCGACCTGCAGCCGAGACAAGAGCGTCTGGGTCTGGGAAGTGGACGAGGAGGACGAGTACGAGTGCGTTACCGTGGTGAACGCTCACACACAAGACGTCAAGCACATCGCGTGGCACCCGACCCAGGAGctcctGGCTTCAGCCAGCTATGACAACAACGTGTGTATTTACAAGGAGGAGGACGACGACTGGGAGCGCCGCGCCACGCTGACGGGACACTCGTCCACCGTTTGGAGTCTGGCGTTCGACGCGGCGGGGGAGAGGCTGGCGTCCTGCAGCGACGACCGCACCGTCAAGATCTGGAAGGAGAGTCCCAGTGGGGGAGGACAGGGAGACTTGTCGTGGAAGTGTGTGTGCACTCTGTCTGGATACCATGGACGAACCGTGTACGATGTCGCCTGGTGTCGGCTGACCGGCGCCCTGGCGACGGCGTGCGGCGACGACACCGTGCGGGTGTTTAAGGAGGACGAGACGGccgaccccgagcagccggtgTTCTCGCTGGCGGCGCAGGCGCCCAGAGCTCACAGCCAGGACGTCAACTGCGTCGCCTGGAGCCCGACGGAGGCGGGACTGCTGGCGTCCTGCAGCGACGACGGCGACATCACCATCTGGAGGTTTCACCAGgagaCCTGAACGCTGAGCTACACGACCacacgttacacacacacacacacacaggagACCTGAACGCTGAGCTACATGACCACacgttacaaacacacacacacacacacacaggagacctGAACGCTGAGCTACA
>XM_039804399.1
TGCAAATTCGCGCACCGGATAAACAAAGATGGCGGTATTTCCTTCATGATTGCTTTTGTGAACTGTTGTAGTTTGTCCTTTGGTGCGAATACGTCCCGTTTTCTCTTCCAGGTGACAAGACAGCAGCACAGTTTGTGTGTTAGAGTGCGTGGCGGTGTTTGTTAACGGATTTAAACGGTCAGCAGCGAGACTAACGGTTTTCAACGGTCAGCAGTAACTGACAGCAGCGGGACTCAGGGGGATACAGCTAGGGCAACGACAGACCGACATGAAGGAAGCTCTGACCCGGGTCCAGACACTCAGCGCGCACCCGGACTCCCGGTGCTGGTTCGTCAGCTGGAACCCGACCGGCACGCTGCTGGCTTCATGCGGGGGAGACAAGGCCATCCGGATCTGGGGGCGAGAGGGCGACTCATGGATCTGTAAGAGCGTTCTTCAGGAAGGACACCAGCGCACCGTGAGGAAGGTCGCGTGGTCGCCCTGTGGGAACTATCTGGCCTCCGCCAGCTTCGACGCCACCACGTGCATCTGGAAAAAGAAGAACGATGATTTTGAGAGTTTGACGGTGTTGGAGGGACATGAAAACGAGGTCAAGTGTGTGGCGTGGGCGCCGTCTGGGAATCTGCTGGCGACCTGCAGCCGAGACAAGAGCGTCTGGGTCTGGGAAGTGGACGAGGAGGACGAGTACGAGTGCGTTACCGTGGTGAACGCTCACACACAAGACGTCAAGCACATCGCGTGGCACCCGACCCAGGAGGAGGAGGACGACGACTGGGAGCGCCGCGCCACGCTGACGGGACACTCGTCCACCGTTTGGAGTCTGGCGTTCGACGCGGCGGGGGAGAGGCTGGCGTCCTGCAGCGACGACCGCACCGTCAAGATCTGGAAGGAGAGTCCCAGTGGGGGAGGACAGGGAGACTTGTCGTGGAAGTGTGTGTGCACTCTGTCTGGATACCATGGACGAACCGTGTACGATGTCGCCTGGTGTCGGCTGACCGGCGCCCTGGCGACGGCGTGCGGCGACGACACCGTGCGGGTGTTTAAGGAGGACGAGACGGccgaccccgagcagccggtgTTCTCGCTGGCGGCGCAGGCGCCCAGAGCTCACAGCCAGGACGTCAACTGCGTCGCCTGGAGCCCGACGGAGGCGGGACTGCTGGCGTCCTGCAGCGACGACGGCGACATCACCATCTGGAGGTTTCACCAGGAGACCTGAACGCTGAGCTACACGACCacacgttacacacacacacacacacacacacgagacctGAACGCTGAGCTACACGACCACacgttacacaaacacacacacacacacacgaga

Function

symbol description
ciao1 Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be part of CIA complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1).

NR:

description
PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG:

id description
K24730 CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804396.1 False 1375 mRNA 0.60 8 40643691 40651595
XM_039804397.1 False 1327 mRNA 0.60 9 40642920 40651595
XM_039804398.1 True 1391 mRNA 0.59 10 40642729 40651595
XM_039804399.1 False 1330 mRNA 0.60 8 40643691 40651595

Neighbor

gene id symbol gene type direction distance location
bnip3la LOC100711031,LOC102292245,LOC101477054,LOC103356614,LOC102193827 coding downstream 351154 40278060 ~ 40291575 (-)
dpysl2a LOC100711297,LOC102201039,LOC101475506 coding downstream 373509 40221529 ~ 40269220 (-)
LOC120559991 rph3a,LOC101477332,LOC102779512,LOC104921713 coding downstream 511498 40041370 ~ 40131231 (-)
LOC120560309 hectd4 coding downstream 644871 39886603 ~ 39997858 (-)
LOC120560407 ttc28 coding downstream 801303 39449933 ~ 39841426 (-)
LOC120560039 NA coding upstream 6017 40657612 ~ 40665117 (-)
LOC120561018 NA coding upstream 148004 40799599 ~ 40800695 (-)
LOC120560210 NA coding upstream 620322 41271917 ~ 41277186 (-)
LOC120560230 NA coding upstream 639015 41290610 ~ 41456856 (-)
LOC120560225 NA coding upstream 647559 41299154 ~ 41303757 (-)
G68843 NA non-coding downstream 4609 40637326 ~ 40638120 (-)
G68839 NA non-coding downstream 11778 40629898 ~ 40630951 (-)
G68772 NA non-coding downstream 29323 40575798 ~ 40613406 (-)
G68771 NA non-coding downstream 36367 40579153 ~ 40606362 (-)
G68830 NA non-coding downstream 37295 40603941 ~ 40605434 (-)
G68765 tmem127 non-coding upstream 25554 40677149 ~ 40732760 (-)
G68857 NA non-coding upstream 39819 40691414 ~ 40691956 (-)
G68866 NA non-coding upstream 108098 40759693 ~ 40923649 (-)
G68867 NA non-coding upstream 131008 40782603 ~ 40872375 (-)
G68875 NA non-coding upstream 150979 40802574 ~ 40838481 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other downstream 312034 40313369 ~ 40330695 (-)
LOC120560061 NA other downstream 615986 40000006 ~ 40026743 (-)
G68717 NA other downstream 706883 39935372 ~ 39935846 (-)
LOC120560826 pitpnb,LOC104952320 other downstream 1181161 39410239 ~ 39461568 (-)
LOC120560036 NA other downstream 2297933 38336088 ~ 38344796 (-)
G68952 NA other upstream 272479 40924074 ~ 40950607 (-)
G68985 NA other upstream 424410 41076005 ~ 41077465 (-)
LOC120560231 NA other upstream 667601 41319196 ~ 41401901 (-)
G68897 NA other upstream 1100941 41752536 ~ 41829133 (-)
G68907 NA other upstream 1103277 41754872 ~ 41782162 (-)

Expression


Co-expression Network