LOC120560255


Basic Information

Item Value
gene id LOC120560255
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42768403 ~ 42771433 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639461.1
tcgcccagaataAGAAAacggagattgaaaagagcgaGAAATTGGCATCATCAGCaaaaagagtgaacattggagctgcttggacacaccaaatcccaactagGTAATTATCCTCCGGACTGCTGCAGTCTCCTTTTTTCCGTGCACCAacatctatatactgtctatgcacCAACTATGCACCAACCTCTATATCCCAGTAAGCACACATACGTCGGCACGACGTATGCAATTGATCGCTTCGTCTGCAATTGATCGCGGGTCATAAAGAAGAATAACGAAGCATCGTTTATTGAGCGTCTGGACGTCTTATGATCGCAATCTATACATCGCAGCGACGTATTAACTATGTCAGTGAGATGTATTAAAAGTTACTCAGTTGTTCACGTGTCATTTGGAAGCATCGTTTATTGAGCGTCTGGACGTCTTATTATGATCGCAATCTATACATCGCAGCGACATAACTATGTCGGTGAGATGTATTAACGGTTCCTCAGTTGTTTGCGGGTCATTTGGAAGCATCGTTTATTGAGCGTCTGGATGtctttactgtacacacacactgttgatgTGATGGACAGTGAATCTGAATTCTGCCCAGCAACATATTCGCGCCACAGTCGATAAAGGAAGGGCAAAAAAAAGTTGCCAGTCTACGAAGGGTTAGGATGGAGACTGCTTCTTTGCTGCTGTCAAATACCATGTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGATGACCACTTATAATCAACACTGCTCCAAGTAGACCACACGCACCCTATCTGACAATTTACTCACGTGCAACATCAATGTACACCTTTTTTATGCAATATCAATAACTCCTCTGTGCAATACTGTGAATACCGTATTATTAAACCTTCTGTCTGTATACTGAACAGTTTTAACTGCTTTATTCTTGCGTTTTTACTGATGCTTTTGTCATTGCACTTTCCTTCTGGTGCAGTATCACTGAAAATGTCCTCCACTGTGGGATTAATT
>XR_005639462.1
ACATCGTGGCGACTGGAAGATCAGAAAACGTCGGCAGGAGGTGGGAGAGAAGGCAATGCAGAGATGAAGGACATCATACCACAATAATAGTTGTGTGTATAAGCCTGATCAACAAGTGAAAAGAGTCAGATAAGAGGAAAGAGTTTGAAAACTGATTTGATGACCACTTATAATCAACACTGCTCCAAGTAGACCACACGCACCCTATCTGACAATTTACTCACGTGCAACATCAATGTACACCTTTTTTATGCAATATCAATAACTCCTCTGTGCAATACTGTGAATACCGTATTATTAAACCTTCTGTCTGTATACTGAACAGTTTTAACTGCTTTATTCTTGCGTTTTTACTGATGCTTTTGTCATTGCACTTTCCTTCTGGTGCAGTATCACTGAAAATGTCCTCCACTGTGGGATTAATTA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639461.1 True 1116 lncRNA 0.42 3 42768404 42771433
XR_005639462.1 False 426 lncRNA 0.39 3 42768403 42769314

Neighbor

gene id symbol gene type direction distance location
LOC120560234 plpp7,LOC107097912,LOC106531399,LOC103368069,LOC105917130,LOC101484670,LOC108248082 coding downstream 106384 42658356 ~ 42662019 (-)
LOC120560191 NA coding downstream 497192 42262425 ~ 42271211 (-)
hpdb hpd,LOC103375816,LOC107092762,LOC101157460,LOC104940904,LOC106516708 coding downstream 511519 42241736 ~ 42256884 (-)
LOC120560212 NA coding downstream 555701 42209201 ~ 42212702 (-)
LOC120560222 NA coding downstream 589105 42175476 ~ 42179298 (-)
LOC120560237 NA coding upstream 48441 42819874 ~ 42822645 (-)
LOC120561115 NA coding upstream 50972 42822405 ~ 42854342 (-)
LOC120560194 NA coding upstream 102464 42873897 ~ 42958273 (-)
snapc4 NA coding upstream 333909 43105342 ~ 43141553 (-)
LOC120561120 NA coding upstream 530186 43301619 ~ 43304446 (-)
G69189 NA non-coding downstream 64411 42696173 ~ 42703992 (-)
G69175 NA non-coding downstream 112481 42653635 ~ 42655922 (-)
G69179 NA non-coding downstream 116997 42650291 ~ 42651406 (-)
G69177 NA non-coding downstream 119376 42648760 ~ 42649027 (-)
G69169 NA non-coding downstream 134678 42615221 ~ 42633725 (-)
G69184 NA non-coding upstream 9385 42780818 ~ 42819334 (-)
LOC120560258 NA non-coding upstream 199033 42970466 ~ 42971625 (-)
G69250 NA non-coding upstream 235426 43006859 ~ 43096619 (-)
G69254 NA non-coding upstream 249699 43021132 ~ 43022838 (-)
G69258 NA non-coding upstream 266114 43037547 ~ 43038477 (-)
G69140 NA other downstream 231445 42497565 ~ 42536958 (-)
G69105 NA other downstream 635822 42130611 ~ 42132581 (-)
G68921 NA other downstream 652142 42107630 ~ 42116261 (-)
G69104 NA other downstream 653644 42112792 ~ 42114759 (-)
rnf34a NA other downstream 661281 42098327 ~ 42107122 (-)
G69229 chek2 other upstream 198651 42970084 ~ 43014065 (-)
chek2 chek2,LOC102215705 other upstream 230822 43002255 ~ 43025050 (-)
card9 card9,LOC108245830 other upstream 304797 43076230 ~ 43099165 (-)
pomt1 pomt1,LOC103397945,LOC102782456,LOC103398975 other upstream 371955 43143388 ~ 43178989 (-)
G69249 NA other upstream 439586 43211019 ~ 43218894 (-)

Expression


Co-expression Network