G281092 (mansc1)


Basic Information

Item Value
gene id G281092
gene name mansc1
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11657890 ~ 11660327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU333129
gccagAGAAAATAGTAGCCTACAATAAATTGGAATTGTTAAAAGCAACCACTCACAAAAACAAGACCAAACCATCACCatcttatatatacagtgatattaaaatacaaaaagcaattcaagaaaaacatgaaaatatctgTGCAACTTAACCGAGTTCCTTAAAATGGAGCACAGGAGCAGGAAGGCGGCTGCAGGTTCAACTGAGTGACTGCTACCACCTCTGGTCAAAAATTGCAATTACAGCTAATTCGATGTTTCGATATATGCCAGGTGCGTTTTAAAACAGTTTGTAACAAGCCCTGGTTTGACTTCCCTTCTTCATCCAAGTCGCCATCATAAGGCCCACTGTAGTACTTCATTAGCTGAAGTCTGTTAGCTGAGTTTGGGCCCTGTAGGAGTTGTGTCAATATCTATAAGTTACAGTAGCAGAACTCGTCCAGCTGGCTTTGCAAATTCCTTTAAATGGATGGAGTAGTTTTTAATAAGTATTAgtattttaaaagtataataTTAGCTTTATGCTTTAGTTAAACAGCCACTGTCTAGTGCTGCAAGCTGTATGAATTAGTTGATACACACTCCCAAATAATAAGTGGAAGTCGACAAAGGCATGTTAAAAACCATACTGGAACACAGCGAATATTGCAAATGACATTTTCCATGCATGCTCTTAGCAAGTGTTACAGTTAACTAGAGTAGACCACCTCACACACGTCTGCACACACCTTCACACGCCTGCTCGTTATGAAAGTATTCATGTGAAAATAGTGCACATCCAATGTAATTTACCACCAAGAAGTAGTATTTCTTTAGACACAAAACAGAAGTGCGGCACAATGTGAACAGTGCATGACAGACTTTCCTATGGATCggtgtaataaatgtaaatacacagtacaacatagtggaaaataaaatcacaaagatTCAATGTACAGCAAGTAAGTACAGTTTGAAAAGCTGTTGTTTTTCGGTAAGGAAGTCCTGAATAGATATGGCCATATAAAGGTGCTTGTGAAAGTCTGAAGAACAGAACCATCTTTTTCAGTATATcctgtcttttattcctttattaacACCCTGCAGTAAAGGCATTAATCACTCAAtaaccaaaaacaacaaatatgtTTAATCTGATATGCAACTGAGTACTGTTTTTGACTTGGTTAAAGTAGTGGAGTACTGGTTTGCTAGTGGCATGGTTTAACTTCATACCTAAATCAAGTCATACGCGAACAGGCCAAAGTGAGTGAACAAATGAAGCCTCAGAAAGGAGTGACTTGATTATGCAGCTGTTCTTATATCAGCTTAATTATTGATTGACTGGTCTTACACAGAGGAAATGTTAATGACTAATGCATTACCATAGCAAAGAATGTCCAACAGTATTCTAGTCCTAAATTTTTAAGCTTCCTGAGGTCTTTGTATTGCTTTTCATTCCCCACAACCCTAAACTCTTTCTCAGTCTCCATCTTGTTACATCCCTCCAGCAGTTACAACATCTTATGAGTGGGGAACATGTGACTTTTCTCAACCCAAAATGTCGTacatatcaaaatattttgttttagtgagctgacagggaaaaaaataaatttcaaaattgAATGGGATTGTCTCTTTGATCATCAAGGATTTGGTTGAGCGTTAGATCTCATAGTGAAGGTCGTTGAGTTCCAGTCTTGTGTAGTGTCTCCTGTCAAAGGATTCCATGGCTCTGCGGCCCATGACGACCACGACAAACATTAGAATGATGAGTGTGAGCACAACCAGCAAAGCCAGACTATTCTTCCACATCAAATGTGACTCCTTAGCCTTATCTGAAGCAGAACCTACTGCTGGAGGGTCAGGGCCTGAATCTCCATTTTTCAGATCATTCTCCATTTCTACGACGACTATCGTTGTCCTTTCAGTGGTAGTTGTGGATGTAGTTGTAGTGGATGTAGTAGTAGTAGTTGTGGTTGTAGAAGGAGTAGTAGTTGTGGTTGTAGAGGGAGTAGTAGTTGTGGTTGTAGCAGGAGTAGTAGTTGTAgtggttgtagttgtagtagttgtagtGGTTGTAGATGTAGTAGTAGTTGTACTTGGCGTAGCAGTagtaggtatcatagttttcTGTATGGCTTGTTTTTGTAAGGTTGGAATCTCAACTACTTTAGCACTGGGTTTCCCATGGGGCTCTGGCTTTTTTGGTGGCCTGATCTGCTTTTTGGAAGGTCTGATTGGATTTGGGGGTGGCTGTGGTGGTTGGACTGGATGTGTAGTTGTTGTGGTGCTCGGTGTGGAAGGTACCTTTGTGGTTGTAGTTGTtgattgtgttgttgttgttgttgtagttgatGTAGTGGTTGGTGTGATTTCAACAGGCATCGTAAG

Function

symbol description
mansc1 Is expressed in female organism. Orthologous to human MANSC1 (MANSC domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU333129 True 2378 TUCP 0.39 2 11657890 11660327

Neighbor

gene id symbol gene type direction distance location
snap91b LOC108279885,LOC108443062 coding downstream 18159 11610133 ~ 11639731 (-)
LOC117599572 LOC108279885 coding downstream 36702 11618064 ~ 11621188 (-)
atp6v1e1b atp6v1e1,atp6v1e1b,LOC108442797,LOC103026244,LOC107583987,LOC107658907,LOC100708725,LOC102784574 coding downstream 56485 11596768 ~ 11601405 (-)
ada2b LOC108279883 coding downstream 61313 11589813 ~ 11596577 (-)
foxm1 foxm1 coding downstream 165621 11487504 ~ 11492269 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding upstream 100454 11760781 ~ 11768919 (-)
tbk1 tbk1 coding upstream 113564 11773891 ~ 11795925 (-)
ptpro ptpro coding upstream 205465 11865792 ~ 11925507 (-)
syn3 syn3,LOC108279673,LOC108412895 coding upstream 328817 11989144 ~ 12081771 (-)
LOC113532343 NA coding upstream 422799 12083126 ~ 12093099 (-)
G281075 NA non-coding downstream 68203 11589003 ~ 11589687 (-)
G281070 NA non-coding downstream 74253 11583393 ~ 11583637 (-)
G281057 NA non-coding downstream 95826 11561725 ~ 11562064 (-)
G281021 NA non-coding downstream 298254 11359362 ~ 11359636 (-)
G280841 NA non-coding downstream 397899 11259791 ~ 11259991 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding upstream 47363 11707690 ~ 11710984 (-)
G281362 NA non-coding upstream 372769 12033096 ~ 12036362 (-)
G281373 NA non-coding upstream 433530 12093857 ~ 12094059 (-)
G281455 NA non-coding upstream 590987 12251314 ~ 12254155 (-)
G281486 NA non-coding upstream 708632 12368959 ~ 12369265 (-)
G281074 rad51ap1 other downstream 69866 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 398478 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 563714 11079168 ~ 11094176 (-)
si:ch211-51e12.7 LOC108280090 other downstream 650747 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 1361692 10255972 ~ 10296198 (-)
dusp16 dusp16 other upstream 60736 11721063 ~ 11752913 (-)
LOC113531972 muc19,LOC108280038 other upstream 3479598 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4740594 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 5178208 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 5298185 16958512 ~ 17027865 (-)

Expression


Co-expression Network