Gene
RNA
| Item | Value |
|---|---|
| gene id | G283218 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 15754317 ~ 15754605 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU335610 | True | 289 | lncRNA | 0.36 | 1 | 15754317 | 15754605 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| srr | LOC108279919,LOC108427077,LOC107726835,LOC105418280 | coding | downstream | 190601 | 15554273 ~ 15563716 (-) |
| alg10 | alg10,LOC108427075 | coding | downstream | 209434 | 15539057 ~ 15544883 (-) |
| LOC113532250 | NA | coding | downstream | 417384 | 15325373 ~ 15336933 (-) |
| LOC113532267 | muc19,LOC108280038 | coding | downstream | 490924 | 15236542 ~ 15263393 (-) |
| LOC113532243 | LOC108279995 | coding | downstream | 518007 | 15213936 ~ 15236310 (-) |
| cerk | cerk | coding | upstream | 1701 | 15756306 ~ 15778944 (-) |
| brd1a | brd1 | coding | upstream | 615064 | 16369669 ~ 16389481 (-) |
| LOC113531729 | pim3 | coding | upstream | 695181 | 16449786 ~ 16452939 (-) |
| il17rel | il17rel | coding | upstream | 814090 | 16568695 ~ 16581436 (-) |
| LOC113531895 | usp15 | coding | upstream | 867498 | 16622103 ~ 16647682 (-) |
| G283081 | NA | non-coding | downstream | 232627 | 15517224 ~ 15521690 (-) |
| G283022 | NA | non-coding | downstream | 364216 | 15387948 ~ 15390101 (-) |
| G282999 | NA | non-coding | downstream | 400876 | 15350706 ~ 15353441 (-) |
| G282950 | NA | non-coding | downstream | 483117 | 15270994 ~ 15271200 (-) |
| LOC113532334 | NA | non-coding | downstream | 541062 | 15209348 ~ 15213255 (-) |
| G283307 | NA | non-coding | upstream | 287757 | 16042362 ~ 16042579 (-) |
| LOC117599449 | NA | non-coding | upstream | 324163 | 16078768 ~ 16082121 (-) |
| G283503 | NA | non-coding | upstream | 484910 | 16239515 ~ 16239901 (-) |
| LOC113532372 | NA | non-coding | upstream | 540275 | 16294880 ~ 16296190 (-) |
| G283546 | NA | non-coding | upstream | 693834 | 16448439 ~ 16449766 (-) |
| LOC113531972 | muc19,LOC108280038 | other | downstream | 570242 | 15139925 ~ 15184075 (-) |
| dusp16 | dusp16 | other | downstream | 4001404 | 11721063 ~ 11752913 (-) |
| G281092 | mansc1 | other | downstream | 4093990 | 11657890 ~ 11660327 (-) |
| G281074 | rad51ap1 | other | downstream | 4166293 | 11586304 ~ 11588024 (-) |
| vegfab | vegfa,LOC108435123 | other | downstream | 4494905 | 11238935 ~ 11259412 (-) |
| alg12 | alg12 | other | upstream | 646316 | 16400921 ~ 16406863 (-) |
| LOC113532230 | LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 | other | upstream | 1083930 | 16838535 ~ 16853395 (-) |
| phf21b | phf21b | other | upstream | 1203907 | 16958512 ~ 17027865 (-) |
| LOC113532261 | smkr1 | other | upstream | 2224158 | 17978763 ~ 17988280 (-) |
| ahcyl2b | ahcyl2,LOC106609228 | other | upstream | 2273129 | 18027734 ~ 18067585 (-) |
