alg12 (alg12)


Basic Information

Item Value
gene id alg12
gene name alg12
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16400921 ~ 16406863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU335937
CTCGCTTCTTGGAGCTGAATAGTAAGTGGAGgtatGACAAGAGAGAAGATCTGATGCCTATAGACCCACTCATGAAGACGTACTCGCATGTACTGATGGAGGCAAACGCAACACTGATATCACTACTGAGTGGTTCTCACAAACCCCTCATCTACATCCAGGGTTATGAACGCTTGCTTGTCAGTGCTTCCCAGTTTCCTCCactcagtgttaaattaaccAGTAAGCTTGTGCTTCTTGAGAGTTTGACACACTCTGAGCTTAGCTGATGCAGACGTGTCAACCTTCATTTCCTACCATTTTGTGTAGGAGATCAGAGTATGCTGGTATGACTTAGTAGTCAAAACTAAGAACAGTTCTTTTTCTGCCCCAATAAAAATGGCAACAGAGCTAATCAACATATCAATCTGGAATGGCTGACagttgtgtaggtgtttgaACTCTCTGATCTTAACTGACACCTTCTGAAAGCTCCACCCCCTTCCTCCAATCTCACAGTAGTAATGTTTTTTCTGGTGCTCTTAACTTGATTTTCCCGCTTGAAAGATTCAGCACCCTTGTGTGCGGTTaagctaaaagaaaatgttttgattctgttaatgtgaaataaaatccgTCGAATGTTGTTCAACTTAGATAAGTAGACAGTTAAGAGCAGTTTATTACTATATTTAAGGATGCACTGAAATTTCAGCCAGAAATGTGTCAAAAATTGTATTTCAGGTttttgaaacaggaaaaatatcaGCCATGTGGAAACATTTCACGGTTTCTACAAGGGACGTGGTGCGAGTGATTTGGAAAATGACTACACTGAAAATTactgttctttctttattattttttttactgtttactgcatttttattctCCCCCCCTCCATGAGACTACATTATTCCTCTTCAGTGTTGGAAGCTATGC
>XM_034313344.1
TTTACTTCCGTCTTGATGACGTACATGGTTGGCTTGGGAAACCGGTTTGTACGCATGCGCAGTTTGACTTGCTCTTCCAGCATGGCGCGGAAGCGAAGAATTCCCCAGCTCCCTCAGTTTTTCATATTGACAGTCGTAATTTCTCTGCATTTATTTGCGTGCCCTTTTACCAAAGTCGAAGAGAGTTTTAACTTGCAAGCCATTCATGACATTCTTTATCACAGATTTGATTTGGAAAAGTATGATCATCATGAATTCCCTGGGGTGGTTCCTCGCACCTTCCTTGGGCCGTTGTTCGTCTCGGTGCTCAGCACACCTATGGCTGCTTTACTCTCCCACCTTGAGGCTCCAAAGTTTTACACACAGATTACTGTGCGTGGTGTTCTGGGGATGTGCGTCTGCCTGACTCTATGGCACATGCAGAAACAGGTGCGGAGACAGTTTGGATCTCTGGTCTCTGGCCTTTTCTGTCTTATGTGCGCTTCACAGTTTCACCTGATGTTTTACAGCACAAGGACTCTGCCGAACGTATTCGCTCTGCCTATAGttttgCTGGCGTTCATGTCCTGGATGGCCCAAAGGCATGGCCCGTTCATCATGCTGTCTGCTTTCGCCATCATCGTGTTCCGCTCAGAGCTCTGCCTCCTGCTTGGGCTCATGTTGCTGATGTCACTTCGATCCAGGAAGCTCAGTATTAAAAAGTTGCTTTATTATGCTGTACCAGCTGGCATTTTGTCACTGGgTTTCACTGTTGGTGTTGATTCTGTGTTCTGGAGGAAGCTGCTATGGCCTGAAGGCCAGGTTCTCTGGTACAACACCATCTTGAACAAAAGCTCCAACTGGGGAACCTCCCCCTTTCTCTGGTACTTCTATTCGGCTCTTCCTCGTGGCCTTGGCGCCACCATCGTCTTTGTTCCGTTTGGTCTTGTGGACAGGCGGATGCACACGATGCTGATACCTGCCGTAGGCTTCATCTTGCTGTACTCCTTCCTGCCACACAAGGAGCTGCGCTTCATCATTTACACGTTCCCCATCTTCAATGTAGTGGCAGCTCGAGGATGCTCCTTCATtttgaaCAACTATCAAAAGTCATGGCTGTATAAAATTGGGGCTGTTGCTGTAATTGGCCATTTGGTTGCAAATGGAGTTTATTCAGGCATTTCGTTATACGTTTCACAATACAACTACCCAGGAGGCAGAGCCATGCAGGAACTGCACACATTAGTGCCAGCTAACATGGATGTGAACTTGCACATAGATGTACTAGCTCAAGGGAggcagcatttggtgatgtccatggggcaGACTTCTCAGGATTTACCTCGCTTCTTGGAGCTGAATAGTAAGTGGAGgtatGACAAGAGAGAAGATCTGATGCCTATAGACCCACTCATGAAGACGTACTCGCATGTACTGATGGAGGCAAACGCAACACTGATATCACTACTGAGTGGTTCTCACAAACCCCTCATCTACATCCAGGGTTATGAACGCTTGCTTGTCAGTGCTTCCCAGTTTCCTCCactcagtgttaaattaaccAGTAAGCTTGTGCTTCTTGAGAGTTTGACACACTCTGAGCTTAGCTGATGCAGACGTGTCAACCTTCATTTCCTACCATTTTGTGTAGGAGATCAGAGTATGCTGGTATGACTTAGTAGTCAAAACTAAGAACAGTTCTTTTTCTGCCCCAATAAAAATGGCAACAGAGCTAATCAACATATCAATCTGGAATGGCTGACagttgtgtaggtgtttgaACTCTCTGATCTTAACTGACACCTTCTGAAAGCTCCACCCCCTTCCTCCAATCTCACAGTAGTAATGTTTTTTCTGGTGCTCTTAACTTGATTTTCCCGCTTGAAAGATTCAGCACCCTTGTGTGCGGTTaagctaaaagaaaatgttttgattctgttaatgtgaaataaaatccgTCGAATGTTGTTCAACTTA

Function

symbol description
alg12 Predicted to enable alpha-1,6-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase).

NR:

description
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase

GO:

id name namespace
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0097502 mannosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000009 alpha-1,6-mannosyltransferase activity molecular_function

KEGG:

id description
K03847 ALG12; alpha-1,6-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU335937 False 921 lncRNA 0.40 2 16400921 16401948
XM_034313344.1 True 1956 mRNA 0.46 9 16401207 16406863

Neighbor

gene id symbol gene type direction distance location
brd1a brd1 coding downstream 11440 16369669 ~ 16389481 (-)
cerk cerk coding downstream 621977 15756306 ~ 15778944 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding downstream 837205 15554273 ~ 15563716 (-)
alg10 alg10,LOC108427075 coding downstream 856038 15539057 ~ 15544883 (-)
LOC113532250 NA coding downstream 1063988 15325373 ~ 15336933 (-)
LOC113531729 pim3 coding upstream 42923 16449786 ~ 16452939 (-)
il17rel il17rel coding upstream 161832 16568695 ~ 16581436 (-)
LOC113531895 usp15 coding upstream 215240 16622103 ~ 16647682 (-)
LOC113532402 LOC108279763,LOC108425342 coding upstream 242209 16649072 ~ 16662362 (-)
kdm5a kdm5a coding upstream 257064 16663927 ~ 16685402 (-)
LOC113532372 NA non-coding downstream 104731 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 161020 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 318800 16078768 ~ 16082121 (-)
G283307 NA non-coding downstream 358342 16042362 ~ 16042579 (-)
G283218 NA non-coding downstream 646316 15754317 ~ 15754605 (-)
G283546 NA non-coding upstream 41576 16448439 ~ 16449766 (-)
LOC117599589 NA non-coding upstream 211849 16618712 ~ 16619718 (-)
G284003 NA non-coding upstream 634764 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 1100013 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 1106747 17513610 ~ 17515240 (-)
LOC113531972 muc19,LOC108280038 other downstream 1216846 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4648008 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 4740594 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 4812897 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 5141509 11238935 ~ 11259412 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 431672 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 551649 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1571900 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1620871 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1661735 18068598 ~ 18082361 (-)

Expression


Co-expression Network