LOC113532230 (LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408)


Basic Information

Item Value
gene id LOC113532230
gene name LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16838535 ~ 16853395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU336181
ccCAAATGGGGGGGAAAAAGGATAGAAACAAATGTTATGTGCACTACAGCTGATTTGGagacattttcacttcatattttcactcaaaaatgaacaaacgGAGGACAACATCAGTGACTGTGACTGGCACTTGCGTCTGTCGCGAGCAGCAGAAACCTGGAATCTTATTGGCTGGTTTAGGAGTTTCagcgaccaatcactgatcggcAAAAAGGAGATTTATGGAACCTCTTTGATCTGCTGAACTTCTTTTCTGCAGAAGCTGTGGAGCAAATTCCTGCAAAAGgagcagaaagataaaaacaaaaagagcaaGCAAAGTCAGTGGAGTCAGAACAGCCTCGCCAATGTATGGAATTGAAGATCGACGAGACCAGGCAGTAGCTTCACATGTCAacaattcattaaataaaaggAGTGTGAGTATGGTCACGTTCAATGAACCATAGAGAACCATAAACAATTTTCTTGAGAGCACCTCTAAGAATCCATGATAAAGGAATACTTTTCACCCATGGAGTCTAAGTGAAATTCAAGACGAAGAAAAACTGACACAGTCTAAAGACAGCAAGTGGCttacacactgaactgaactgatttAGTGGAGAATTTACTTGAATAACAGATCATATTCATATATGCTTTATGAGACACTGTGTTCCTGATGTATTTTAGGCTATAAGAACagaagtgtgtgagtatgagtgtgtttgtatgttctcACAGGTACACATCAAGAATATGGCACATACGAACGTTGCATATCATCTGCTATACCAAAACATAGAATTGCATGCTTGGAAACAGCATGCAATCAGACAGAATAATCAAAATGGCTTCAAATCTATTCATTAAAGAATATGGGAGCAATGGCAGCATTAATCAAAAATAGTTCTGTTTTTTGACAGCTGAGGGTAACATTGttaaatctatattttttaatctttcctgtttttttatgGAAACCAAATTGGTTAGATTGATtggtgaactttttttttttaacgtgtgCTGATTTTGTGGAatgattttcttctttctcgTGAATGATTTTGCTTTCAAAGTGTGGATGAACGTTAGAATATTCACATCATGTGAACAGCCTCAGTCCCCCTTTTCAACAATGTTGGCACAGGGCAAAAGCTGCAAGCTTTTGATTTCACATTATTCCTTTTTATAATGACATGGTCATATTGTTTGAAATAACCTTCAGATCAGAATGCTGTATCACCTGTCATGTAAAGCATCTACCTCAATGTCATGATCTTCATTTCTGCCAAAAGCTTTGCCCTGGGAAAGCAGCATCAGTCATGTGACTGGGCCATCATTAAAGCAATGTGTTGTTTACTCTGCCATGCAGTCAGAAGCAGTTATATATCATGTTCAAAATAGCATGACTCACTTGTCCTCATTGTCCATTCTAGACGGGTGTTGTGTCTATGCATTGCTGGCTGTTGTGTCTATACATGCTGTTGTACATTGAAATGCCACCTGGTATCATGTTTGGTACAGTTATGCAAAGTCTTTAATACAATATCTGACCTTGATCGACAGGTAATTAGCAGTGTAAGAGTGTAGTTCATATCAATCTGTACATTTCACAGCATCcaagtgttaaataattttttgggTGTTGTGTTTGTCAAGCTGCATAAATATTGCACTGTATGGTATATAATCTGTTTCCATTTCCAAGTCTACTTTATCCATATAAAAGAGAAATCTGCAATTATAATATGCAACATCAAATACGCAACCTTAATCTATGGAAGAACGGATACAGTATTCAAAATGCACATCTCTACTCACGTGTTCTGCAGTAAGCACAGTTCCTTAAGCCAACTTGTTGGTAAAGTGTGTCAGTAGCCTTCCCGTatgatagagagaaagagagattacatatttttttttgtccatgaaTTATCTTAAGCTCCATAAACATCATGACATGGCAGACAAGAACCAATGGGAGTGTATGAAAGAAAGCAATAGTAGAGAAATTCCATGCATTTCAGTCATTATACACATTGAGGTCTTCCTAGAAGAAACAAAATGCCTTTGCTTTGTTTCCTTTGAATAGgtcctttttaattttttcctgcCATTCTATTTAATCTGACCTATTGTGGTAAATAAGTGTTTGTATCTTGTTTTTCTGATGATTGCATATGGACAGTGTAGAGGGTGATTGTTGGCTTActgatgaatggatggatgg
>XM_026923499.2
TTGAGCAGAGTGAGCATGTCCATattttgtttggggaaaaagaaaCCCCTTCAAGGAGAACCACAACTAGAGACACGACTGAAAGTCTCAAATCCGATTATTTACTTAAAGAAAGATCTGAGCAACAGGTAAAAACTCGCAGAGACAGTATGATTTTGTGAAGGTCTGCAAATTTCATGCATCTGAAAAGAACGcatgtgttgtatttttgtcGTCTTCTTGCTGAAGaagttttgcatttttatcGTATTAATCATGCCATGTTTTTGGTGAACTAAGGTCGCGTGAGTATCTTGAATTTGGTTAGTGCTCGCCCCTCTGGTTCAGCGTGAGCGTCTGCGCACGTCAGTCCGGGGAGGGCAATGAGATGCTGCTTATTAATGCTGCGCGTGTGACAACAGCCAGGCAGGAGCAGTCCAGACCGCCAGCGCGCGGAGGCAACGGGGGACagagagcgcgcgcgcgcgtgcgtcTACCGGCgcgggaaaaaaagaaaaaatgcgTGAGAAAACAGTGAAGGCGTGAAAAAGCGAGtcggagagaaagacagagaggaagataaGCGAGGAGAGACAGCGACGGAGCAGAACCCGTGGGGTTCTTTCGAGACGACACAACGCAGACCTAAAGCGCGCACCGAAACGGCGAGGCAGTAGGAGCAGGCACCGAGCAGCGTCGCCCTGGTTTGGGGCGCTGAGAAGAAGATGACTGTGGTGCCAGGGGAGAACCTGGACGAGACCGTGGCCTTGGCCGGCCTCTGTCACGACGCTTACGAGCCCGAGAGGGCGGACCAGGAGTGCTGCGAGCGGGTGGTCATCAACATCTCAGGCCTGCGCTTCGAGACGCAGCTCAAGACGCTCGCCCAGTTCCCCAGCACTCTGCTCGGCGACCCGAGAAAGCGGATGCGCTTCTTCGACCCGCTCAGGAATGAATACTTCTTCGACCGCAACCGGCCGAGCTTTGATGCCATCCTCTACTACTACCAGTCGGGTGGGAGACTCCGGAGACCGGTCAACGTGCCCGTGGACATCTTCATGGAGGAGATCAAGTTTTACGAGCTCGGCGAAGAGGTGATTGAGAATTTCAAAGAGGACGAAGGTTTCATTAAAGAGGAGGAGCGCCCGTTACCGGAGAACGAGTTCCAGCGACAAGTGTGGCTCTTGTTTGAATATCCCGAGAGTTCAGGACCCGCCAGAGGGATCGCGATCGTCTCCGTGCTCGTGATTTTGATCTCCATCGTCATCTTTTGCCTGGAGACGTTGCCAGAGTTCAGGGAGGACGCCAAGGCGTACGACGAGCACCTCCCGCTGAACGGCACGCTGAGCATGAGGAAGCCGAACCCGTTCACAGACCCGTTTTTCATCGTGGAGACGCTGTGCATCATTTGGTTCTCCTTCGAGCTGGTCGTGCGCTTTTTGGCGTGCCCAAGCAAGGCGgcatttttcaaaaacataatgaacacTATCGACGTGGTGGCAATCATGCCGTACTTCATCACACTCGGGCTTGAGCTTGCCGAGCACCAAGGCAACGGGCAGCAGGCGATGTCACTGGCCATCCTGCGTGTTATCCGGCTCGTGCGCGTGTTCCGCATCTTTAAGCTCTCGCGCCACTCCAAAGGCCTTCAGATCTTGGGCAAGACGCTGCAGGCGAGCATGCGCGAGCTCGGCCTTTTgatcttcttcctcttcattgGGGTCATCCTCTTCTCCAGCGCAGTGTACTTCGCCGAGACGGATGACCCCGAGTCAGGCTTCAGCAGCATCCCGGACGCCTTCTGGTGGGCCGTGGTCTCCATGACCACCGTGGGTTATGGAGACATGTGCCCCGTGACCATCGGAGGCAAGATCGTGGGCTCTCTGTGCGCCATCGCCGGTGTGCTCACCATCGCGCTGCCCGTACCCGTGATCGTGTCCAACTTTAACTACTTCTACCACCGGGAGACAGAGCACGAGGAGCAGCTTCAGTACACGCACGTGACGTGTGGCCAGcagccccagcagcagcagcagcctggCTACGGAGATTTCGGCAGGAGCGAGAGCAAGCCTTCCCTCTCCAAATCGGACTACCTGGACTCGGAAGACGCAGACTCAATCAAGTACACAAACTGCAGCCCCCATAAAGCCTACACGGGGAAACTCACAGATGTATGAgtggaaaacacaaacacaaaaagtgACCCGCAAACACACAGGCGCATTTCTGTGAGCACAATTCCTCATCCTGCGCTCCAGCTTGATTAGATCCGGTTATCGAGCTCTGATTATCAAGCAGCCTGCGCGCTACACGgagtcattttcatttaaaaactcATTAGCAGCGGATTAATGAGACGAGGACGTGAAAAAGGGATGGTTcagatctttctttctttctttttctttctttcttaaactgTCTTCCATGTTTGCGATCATCTGCATCTCTAGCCTCAAAATAGCCTAGAAATCTATAAGAAAACAATAGGAGAAATAATCAAGCCCAGCCTCGTGGAATAGCACTTTACTCATGTACTCTTaggaataaataatttattaggCTATTAGTTTGGGTGGATCTGGGgtttaaaagtttacatatgaTTTATCTATTCGGAACAAAGCGAAAAGGACCAATATATCtaaattatgttatatttttattatctattttatttatatatatttcctgGCGACTGCAAGGTCACTCAGTGTGGCTCCCTCTTGTTTTGGTTAAtgctcctctttttttttttttttttttccatggctGGAAAGGTCAGGTGTGATTAAATATGATCAGTAGGCACTTATCGACGAGCACTTTCACTACACAGCTGTCATCTTAATTACAGTTCGTCCCATTTTTAAACACGTTTTAATACACTTCATTTGCCCTGTATTTTAATTGATCTCTAATTACTGCTTATCATCCAAATATATAGGTGTGTAACTACTAAGCcaaaatactactaataataataataatgatgatgatgataattaatAGCATTAATGCCTCTGGTTCCATTTCAAAGAAAGAACAGGATTAGCAGAAGGTTTGGAAGATGGCAAAATGTGCAGCTTTACCAAAACCAGTGTTTGTATGACCACGTTTCTAAACCTAGAGTGCCATCTATTGGACAAGAGAGAGGGGGCGGAGTCTCAGACACTCTTTGGAGACGGAAGTGTTTCTATAGCAACCTTCCAGACTGTTCTGAATCTTCTGACATCAGGCAATGGCTACGTCCAAACCTGcgtactactgtactaaatagtaGGCTATATATGGTATCTTCTGTAGTTGTActatttttgcatatatttcTGTACAGTAGTAGGTGTTTTTGGACGTGCTTAAGGTTTTGCCTTAAGTTCTTTTCCTGCTAGACAATACCAGGTTGTTGTTGCTTTTAATTTTGCTGCTTTACATAACGCCGACCAAGTAATGTAGCCTACATAGACAAACGACCTTAGAGTGAATAGGCCTGTTCGGCAGCTATAGACGCCCAAATAATACTTTTACAAAGAAAGTCTAAATGCAAGCAACAGAAAATTGTCGCTTAATCCTGGCTTCACTTGTCAGTCTGTGTTTCTTGAGGATCTCGGTATCAGCATCgcggatgaaaaaaaaaaaaaaaaaaaaaaggcgccCAAATGGGGGGGAAAAAGGATAGAAACAAATGTTATGTGCACTACAGCTGATTTGGagacattttcacttcatattttcactcaaaaatgaacaaacgGAGGACAACATCAGTGACTGTGACTGGCACTTGCGTCTGTCGCGAGCAGCAGAAACCTGGAATCTTATTGGCTGGTTTAGGAGTTTCagcgaccaatcactgatcggcAAAAAGGAGATTTATGGAACCTCTTTGATCTGCTGAACTTCTTTTCTGCAGAAGCTGTGGAGCAAATTCCTGCAAAAGgagcagaaagataaaaacaaaaagagcaaGCAAAGTCAGTGGAGTCAGAACAGCCTCGCCAATGTATGGAATTGAAGATCGACGAGACCAGGCAGTAGCTTCACATGTCAacaattcattaaataaaaggAGTGTGAGTATGGTCACGTTCAATGAACCATAGAGAACCATAAACAATTTTCTTGAGAGCACCTCTAAGAATCCATGATAAAGGAATACTTTTCACCCATGGAGTCTAAGTGAAATTCAAGACGAAGAAAAACTGACACAGTCTAAAGACAGCAAGTGGCttacacactgaactgaactgatttAGTGGAGAATTTACTTGAATAACAGATCATATTCATATATGCTTTATGAGACACTGTGTTCCTGATGTATTTTAGGCTATAAGAACagaagtgtgtgagtatgagtgtgtttgtatgttctcACAGGTACACATCAAGAATATGGCACATACGAACGTTGCATATCATCTGCTATACCAAAACATAGAATTGCATGCTTGGAAACAGCATGCAATCAGACAGAATAATCAAAATGGCTTCAAATCTATTCATTAAAGAATATGGGAGCAATGGCAGCATTAATCAAAAATAGTTCTGTTTTTTGACAGCTGAGGGTAACATTGttaaatctatattttttaatctttcctgtttttttatgGAAACCAAATTGGTTAGATTGATtggtgaactttttttttttaacgtgtgCTGATTTTGTGGAatgattttcttctttctcgTGAATGATTTTGCTTTCAAAGTGTGGATGAACGTTAGAATATTCACATCATGTGAACAGCCTCAGTCCCCCTTTTCAACAATGTTGGCACAGGGCAAAAGCTGCAAGCTTTTGATTTCACATTATTCCTTTTTATAATGACATGGTCATATTGTTTGAAATAACCTTCAGATCAGAATGCTGTATCACCTGTCATGTAAAGCATCTACCTCAATGTCATGATCTTCATTTCTGCCAAAAGCTTTGCCCTGGGAAAGCAGCATCAGTCATGTGACTGGGCCATCATTAAAGCAATGTGTTGTTTACTCTG

Function

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU336181 False 2218 lncRNA 0.37 2 16838535 16849762
XM_026923499.2 True 4985 mRNA 0.45 2 16839401 16853395

Neighbor

gene id symbol gene type direction distance location
kcna1b kcna1a,kcna1l,LOC108279524,LOC108425346,LOC105912431 coding downstream 21115 16815760 ~ 16817420 (-)
LOC113532119 LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172 coding downstream 66840 16769270 ~ 16771695 (-)
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding downstream 139079 16688373 ~ 16699456 (-)
kdm5a kdm5a coding downstream 153133 16663927 ~ 16685402 (-)
LOC113532402 LOC108279763,LOC108425342 coding downstream 176173 16649072 ~ 16662362 (-)
kiaa0930 kiaa0930,zgc:172139 coding upstream 209373 17062768 ~ 17099329 (-)
trnar-ccg_5 NA coding upstream 250170 17103565 ~ 17103637 (-)
LOC113532299 LOC108280013,LOC108425352,LOC108280014,LOC104927640,LOC103363517 coding upstream 265951 17119346 ~ 17193239 (-)
LOC113531742 LOC108280014,LOC108425356,LOC108425352,LOC108280013,LOC103363517 coding upstream 408295 17261690 ~ 17316582 (-)
sapcd1 LOC108280126 coding upstream 581047 17434442 ~ 17439078 (-)
LOC117599589 NA non-coding downstream 218817 16618712 ~ 16619718 (-)
G283546 NA non-coding downstream 388769 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 542345 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 598634 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 756414 16078768 ~ 16082121 (-)
G284003 NA non-coding upstream 188232 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 653481 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 660215 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 668031 17521426 ~ 17523643 (-)
G284146 pacsin2,LOC108279716,LOC103038884,LOC107725788 non-coding upstream 694937 17548332 ~ 17553258 (-)
alg12 alg12 other downstream 431672 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1654460 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 5085622 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 5178208 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 5250511 11586304 ~ 11588024 (-)
phf21b phf21b other upstream 105117 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1125368 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1174339 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1215203 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 1229843 18083238 ~ 18083309 (-)

Expression


Co-expression Network