LOC113532261 (smkr1)


Basic Information

Item Value
gene id LOC113532261
gene name smkr1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17978763 ~ 17988280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU337036
TCGCCGCCTCTCAGCTCAAAACTCATGGAGCGCGCGTGTCTCCAGGACAACTCGACATAAACAAAGCATTTCCGCTGGGAATAAGAGCCCATGGTGTTATTCTCCTCTCAGAGTGTCTTCAGTACTCACCTGAGAAAAGCAGACACTTGAGAATGcctACAGGAACCAAGAAGTCCAAGTCCCATAGTGCCAAACCTAGGAAAAAGAGTGACAAAAAGCGACTATCTAAGAAAAGGTCAGCGAGCACTACATGCACAAAGCCAGCAGTGGATATTCTGAGCCCAGCTGCCATGGAGAACGCCTActacatttcccacaatgcagtAGACTGCCTGGAGTTCAGAGGTTTTGGCTGGCCTGAAGCCActaagaaaaaaggaaagggactcaagaaaaaaacaaaaaaacaaaaatgaggaAGAGAGAACCAGTCTTACTGCGAATTACAAAAATATCAGCCGTAGATATTCTGTTTATGATGCTGTCAGGTACATCAATTCTGAATCaatgctgtatatatttttaatgaagccAAGCTATCTTTCGTGGATGCATgtgtaatgctaatgctaagttGTATATTTCTGAGATAAACAACAACAGATAAAATTCATTCACTGGCCTCTTTAGACTGTTGATATTAATTAATGACCAGGTTGGTTGATATTAATTAATCACCAGCTGCTGTTTTTGACAGTgtacacagtgctgttgaatccttgattctgattagtcagaaggtgctgataaATCTTTTTGTAACAGCCGCACTtacaatagttctggctgcaaaggttatattaatgtgctcattacTGTAACAACTTATGCAGGAATGGTGAAcatgccac
>TU337037
TCGCCGCCTCTCAGCTCAAAACTCATGGAGCGCGCGTGTCTCCAGGACAACTCGACATAAACAAAGCATTTCCGCTGGGAATAAGAGCCCATGGTGTTATTCTCCTCTCAGAGTGTCTTCAGTACTCACCTGAGAAAAGCAGACACTTGAGAATGcctACAGGAACCAAGAAGTCCAAGTCCCATAGTGCCAAACCTAGGAAAAAGAGTGACAAAAAGCGACTATCTAAGAAAAGGTCAGCGAGCACTACATGCACAAAGCCAGCAGTGGATATTCTGAGCCCAGCTGCCATGGAGAACGCCTActacatttcccacaatgcagtAGACTGCCTGGAGTTCAGAGGTTTTGGCTGGCCTGAAGCCActaagaaaaaaggaaagggactcaagaaaaaaacaaaaaaacaaaaatgaggaAGAGAGAACCAGTCTTACTGCGAATTACAAAAATATCAGCCGTAGATATTCTGTTTATGATGCTGTCAGGTACATCAATTCTGAATCaatgctgtatatatttttaatgaagccAAGCTATCTTTCGTGGATGCATgtgtaatgctaatgctaagttGTATATTTCTGAGATAAACAACAACAGATAAAATTCATTCACTGGCCTCTTTAGACTGTTGATATTAATTAATGACCAGCTGCTGTTTTTGACAGTgtacacagtgctgttgaatccttgattctgattagtcagaaggtgctgataaATCTTTTTGTAACAGCCGCACTtacaatagttctggctgcaaaggttatattaatgtgctcattacTGTAACAACTTATGCAGGAATGGTGAAcatgccac
>XM_026923556.2
TAGCCGTCAATAATTATGTTTTCAGCCAGGAACTTCAGGCCCCGCCTCCCAAATCTCGCCGCCTCTCAGCTCAAAACTCATGGAGCGCGCGTGTCTCCAGGACAACTCGACATAAACAAAGCATTTCCGCTGGGAATAAGAGCCCATGGTGTTATTCTCCTCTCAGAGTGTCTTCAGTACTCACCTGAGAAAAGCAGACACTTGAGAATGcctACAGGAACCAAGAAGTCCAAGTCCCATAGTGCCAAACCTAGGAAAAAGAGTGACAAAAAGCGACTATCTAAGAAAAGGTCAGCGAGCACTACATGCACAAAGCCAGCAGTGGATATTCTGAGCCCAGCTGCCATGGAGAACGCCTActacatttcccacaatgcagtAGACTGCCTGGAGTTCAGAGGTTTTGGCTGGCCTGAAGCCActaagaaaaaaggaaagggactcaagaaaaaaacaaaaaaacaaaaatgaggaAGAGAGAACCAGTCTTACTGCGAATTACAAAAATATCAGCCGTAGATATTCTGTTTATGATGCTGTCAGGTACATCAATTCTGAATCaatgctgtatatatttttaatgaagccAAGCTATCTTTCGTGGATGCATgtgtaatgctaatgctaagttGTATATTTCTGAGATAAACAACAACAGATAAAATTCATTCACTGGCCTCTTTAGACTGTTGATATTAATTAATGACCAGGTTGGTTGATATTAATTAATCACCAGCTGCTGTTTTTGACAGTgtacacagtgctgttgaatccttgattctgattagtcagaaggtgctgataaATCTTTTTGTAACAGCCGCACTtacaatagttctggctgcaaaggttatattaatgtgctcattacTGTAACAACTTATGCAGGAATGGTGAAcatgccacataaacagattttaaaactgtg

Function

symbol description
smkr1 Orthologous to human SMKR1 (small lysine rich protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337036 False 851 TUCP 0.41 3 17978785 17980246
TU337037 False 825 TUCP 0.41 4 17978785 17980246
XM_026923556.2 True 928 mRNA 0.41 4 17978763 17988280

Neighbor

gene id symbol gene type direction distance location
ano2b LOC108279462,LOC108425378 coding downstream 7519 17907628 ~ 17971244 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding downstream 169474 17795884 ~ 17809289 (-)
LOC113531978 LOC108279914 coding downstream 362514 17611890 ~ 17616249 (-)
ckap4 ckap4 coding downstream 384446 17591120 ~ 17594317 (-)
LOC113531974 LOC108279712 coding downstream 472266 17498388 ~ 17506497 (-)
strip2 strip2,LOC107656389 coding upstream 2349 17990629 ~ 18023472 (-)
slc5a8 LOC108279688 coding upstream 109347 18097627 ~ 18106446 (-)
arl1 arl1 coding upstream 149515 18137795 ~ 18141774 (-)
tnnt2e LOC108425385,LOC108279691,LOC107658902,LOC107725993 coding upstream 157592 18145872 ~ 18156560 (-)
tnni4a zgc:101560,LOC108279438,LOC107656258,LOC107725970,LOC107581287,LOC108425328,LOC107658770,LOC107584059 coding upstream 237220 18225500 ~ 18233739 (-)
G284352 NA non-coding downstream 77496 17901025 ~ 17901267 (-)
G284349 NA non-coding downstream 80533 17895335 ~ 17898230 (-)
G284323 NA non-coding downstream 127869 17850457 ~ 17850894 (-)
G284295 NA non-coding downstream 188000 17790534 ~ 17790763 (-)
G284294 NA non-coding downstream 213834 17762031 ~ 17764929 (-)
G284520 NA non-coding upstream 100374 18088654 ~ 18088942 (-)
G284559 NA non-coding upstream 192099 18180379 ~ 18184992 (-)
G284590 NA non-coding upstream 358173 18346453 ~ 18346836 (-)
G284862 NA non-coding upstream 831662 18819942 ~ 18823200 (-)
G284866 NA non-coding upstream 842645 18830925 ~ 18831139 (-)
phf21b phf21b other downstream 950898 16958512 ~ 17027865 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other downstream 1125368 16838535 ~ 16853395 (-)
alg12 alg12 other downstream 1571900 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 2794688 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 6225850 11721063 ~ 11752913 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 39454 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 80318 18068598 ~ 18082361 (-)
trnaa-ugc_10 NA other upstream 94958 18083238 ~ 18083309 (-)
trnaa-ugc_11 NA other upstream 95503 18083783 ~ 18083854 (-)
trnaa-ugc_13 NA other upstream 102271 18090551 ~ 18090622 (-)

Expression


Co-expression Network