LOC113531721 (iapp)


Basic Information

Item Value
gene id LOC113531721
gene name iapp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15116227 ~ 15118561 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922587.2
CCAGTAACTTCTGCTGCTCTCACCTGCACCTAAACTAGGGAAgAATCCTGCCATGTATCATCTAAAATTGGCTGCCCTGCTTCTTCCCCTGCTTgtgctgctgcagtgtgtgaccACAGCACCAAACAACAGGTTTTCCATCTCCTCCACTGAGCAGGTGGATGAAACGGTGGATGGGAAAAGATGGACGGCCCCAGGCTTGCTGATGAACCCTTTCCTCCAATTGGCAGGGTTGCGACCTGAGAGGGGACTCAACACAGTCAACAGCCTGCAGCACCACATACAGAAGAGAAGATGCAACACGGCCACATGTATGACCCAGAGGCTGGCCGACTTCCTCATTCGCTCCAGTAACACCGTTGGCACAGTCTACATCCCCACTAACATCGGCGCAAACACCTATGGCAGGAGGGACGTGTTCCAATCACCCAACTCACTGCCTCTTTAGTCTCCTCTTGagtatatatacaaacacagagccactgtaacaaaattgaccataataatgttgataatgaagatgatgatgatgacagtgactCATCTGAgtgttattttactgttttattttccctGTCTGTGCCTTTTGTTATGTTACACACAACATCATAATGTACA

Function

symbol description
iapp Enables identical protein binding activity. Involved in several processes, including G protein-coupled receptor signaling pathway; positive regulation of intracellular signal transduction; and positive regulation of macromolecule metabolic process. Located in inclusion body. Implicated in type 1 diabetes mellitus and type 2 diabetes mellitus. Biomarker of type 1 diabetes mellitus and type 2 diabetes mellitus.

GO: NA

KEGG:

id description
K08039 IAPP; islet amyloid polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922587.2 True 618 mRNA 0.48 4 15116227 15118561

Neighbor

gene id symbol gene type direction distance location
pyroxd1 pyroxd1,LOC108279593 coding downstream 4962 15101356 ~ 15111265 (-)
LOC113531968 LOC108279915,LOC107597036 coding downstream 37440 15059512 ~ 15078787 (-)
slc6a1l LOC108279609,LOC108427058,LOC107584717,LOC107689715,LOC107748475,LOC107597007,LOC101061665 coding downstream 68756 15032648 ~ 15047471 (-)
LOC113531970 LOC108279954 coding downstream 230655 14873850 ~ 14885572 (-)
kin kin coding downstream 1257554 13851543 ~ 13858673 (-)
LOC113532053 LOC108279522 coding upstream 4173 15122734 ~ 15138477 (-)
LOC113532243 LOC108279995 coding upstream 95375 15213936 ~ 15236310 (-)
LOC113532267 muc19,LOC108280038 coding upstream 117981 15236542 ~ 15263393 (-)
LOC113532250 NA coding upstream 206812 15325373 ~ 15336933 (-)
alg10 alg10,LOC108427075 coding upstream 420496 15539057 ~ 15544883 (-)
G282718 NA non-coding downstream 10232 14812922 ~ 15105995 (-)
G282673 NA non-coding downstream 376790 14739216 ~ 14739437 (-)
G282649 NA non-coding downstream 385223 14715045 ~ 14731004 (-)
G282410 NA non-coding downstream 725670 14389823 ~ 14390557 (-)
G282409 NA non-coding downstream 742714 14372731 ~ 14373513 (-)
LOC113532334 NA non-coding upstream 90787 15209348 ~ 15213255 (-)
G282950 NA non-coding upstream 152433 15270994 ~ 15271200 (-)
G282999 NA non-coding upstream 232145 15350706 ~ 15353441 (-)
G283022 NA non-coding upstream 269387 15387948 ~ 15390101 (-)
G283081 NA non-coding upstream 398663 15517224 ~ 15521690 (-)
dusp16 dusp16 other downstream 3363314 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3455900 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3528203 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 3856815 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 4022051 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 21364 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 1282360 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1719974 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1839951 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2860202 17978763 ~ 17988280 (-)

Expression


Co-expression Network