LOC113531729 (pim3)


Basic Information

Item Value
gene id LOC113531729
gene name pim3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16449786 ~ 16452939 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922599.2
GCTCAGACGCAGCGCAGACCGACTCCTCAGAGCAGGCGCTTCAGCAGATACGTCCAAAAATTGAGCGGTATTCGCGTTAATGTAACGCCAACTCGTCTCTCCTTGGTGTTCATCAAGGGGACGAGGGTCACCCAGGATTTTACCCGGTTGAGGATTGTATTTATTTGAGCCCTGGATTGACTTTTTTTGTGGCTGCGTTTTCTCGGAGACGCTGCGTCGCATCGGATCTAACGGATCTACCTTCGCCTCATCTCCGTGTGCCTTCCGTTAGTAGCGCAGCTACTCGTCTTCTGAGAGCCTTTTCTCCGTAAACTGGACTTCTATTGCGAAAAAAACAAATACCTTATAGCAAAGGATTCCTTTCCATCTCCACCTCATGCGCTGAAAATATGCTGCTATCAAAGTTTGGCTCTTTTTCTCACATCTGCAGCCCGAATAGTGTGGACCATTTGCCGGTGAAAATCCAGCTTCAGCCAGTGAAAGTGGAGCCAGAGCCGTTTGAGAAGGTCTATCAGGTGGGCTCTGTGTTGGGAAGCGGGGGATTTGGGACCGTCTACGCTGCCAGTCGGATTTCTGACGGTTTACCGGTCGCAGTTAAACATGTTGCAAAGGAGAGAGTCACAGAATGGGGCTCCATTAATGGTGTGATGGTGCCTCTGGAAATCGTGCTGCTGAAAAAAGTAGGCTCCAACTTTCGAGGAGTCATAAAGCTGCTGGACTGGTACGAGAGGCCCGATGGCTGGCTGATCGTCATGGAGAGACCGGAGCTGGTCAAAGACTTGTTTGACTTCATCACGGAGAAGGGCGCCCTGGACGAGGGCACAGCACAGGGCTTTTTCCGCCAGGTGCTGGAGGCCGTTCGGCACTGCTACAGCTGCGGCGTCGTGCACAGAGACATCAAAGATGAGAACCTGCTGGTGGACCTGCGCACCGGAGAACTCAAGCTGATCGACTTTGGCTCGGGGGCCATTCTCAAGGACACGGTGTACACCGATTTTGACGGTACGAGGGTGTACAGTCCGCCGGAGTGGATACGTTTCCATAGATACCATGGCCGCTCAGCCACCGTCTGGTCACTAGGGGTGCTGCTGTATGACATGGTGTGTGGAGACATTCCCTTTGAGCAGGATGAGGAGATCCTCAGAGGACGACTTTATTTCAGACGGAGAATCTCAGCAGAGTGCCAGCAGTTGATTAAGTGGTGTTTGTCCCTGAGGCCATCAGACCGACCAACTCTGGAGCAGATATTTGAGCATCCATGGATGCGTCACGCTGAAGCATCTAAGACGGAGGAGGGTGACATCCGGCTATGTACCATCAGTACGGACACTTCCAGCATGAGCTCCAGCAAGGAGAGCCTCTGAAAGAAATAACATCTTTCTCTGAAAAAGAGCTGGGACTCAACAGACTCTTAATCTGCATCCCTGTCTTGTCAGGCTTGCAGataccttttctttttttttttt

Function

symbol description
pim3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human PIM3 (Pim-3 proto-oncogene, serine/threonine kinase).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08807 PIM3; proto-oncogene serine/threonine-protein kinase Pim-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922599.2 True 1466 mRNA 0.52 7 16449786 16452939

Neighbor

gene id symbol gene type direction distance location
brd1a brd1 coding downstream 60305 16369669 ~ 16389481 (-)
cerk cerk coding downstream 670842 15756306 ~ 15778944 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding downstream 886070 15554273 ~ 15563716 (-)
alg10 alg10,LOC108427075 coding downstream 904903 15539057 ~ 15544883 (-)
LOC113532250 NA coding downstream 1112853 15325373 ~ 15336933 (-)
il17rel il17rel coding upstream 115756 16568695 ~ 16581436 (-)
LOC113531895 usp15 coding upstream 169164 16622103 ~ 16647682 (-)
LOC113532402 LOC108279763,LOC108425342 coding upstream 196133 16649072 ~ 16662362 (-)
kdm5a kdm5a coding upstream 210988 16663927 ~ 16685402 (-)
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding upstream 235434 16688373 ~ 16699456 (-)
G283546 NA non-coding downstream 20 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 153596 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 209885 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 367665 16078768 ~ 16082121 (-)
G283307 NA non-coding downstream 407207 16042362 ~ 16042579 (-)
LOC117599589 NA non-coding upstream 165773 16618712 ~ 16619718 (-)
G284003 NA non-coding upstream 588688 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 1053937 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 1060671 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 1068487 17521426 ~ 17523643 (-)
alg12 alg12 other downstream 42923 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1265711 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4696873 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 4789459 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 4861762 11586304 ~ 11588024 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 385596 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 505573 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1525824 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1574795 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1615659 18068598 ~ 18082361 (-)

Expression


Co-expression Network