il17rel (il17rel)


Basic Information

Item Value
gene id il17rel
gene name il17rel
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16568695 ~ 16581436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922749.2
GCctcagacagaaacagagatcAGCTTAACCTGCCCTGTCCATCATTTGGGTTCTCTTCCTCTAGCACCTTCAGCCTATTCACCCCTCAACCAGCTCCAAGCTTCTCATTGAAGATGAAGAGTGTgttgctgctactgctgctgttaTTGCTGGCTTTCTGCACTTCCAGACTGCAGGGAGAACGGGTAGAGAAGTGTGAATACCCTTGCTCACAGGGACTCCATTGCAAGACGAAGCCTCATTTCTCATTTGAGCAATGCAAGAAACGGCCAGACGGCATGACCAGAGATGTGTTTAGGAACACAAGCATCTCCACAGTGATGAGGTGTAAAGGGGTTCGACAGTGTTCTCTTTACCTCCGGATCAGGACTCATCTACAGCTAAAGAAACACATCCATGGCATCTACATATGCACAGTCAGTGCAGCGATGATGGAACACTGTGGGATTGTGATCttctcacgcacacacaaagaaaaagtgGTGGACCATCAGGTGCATATTCAGGATGATTGTCTGGAAGTAGGCATAGGACAAGATGTTTATGTAACCCTCCAAACTTGGCCTCAATTCTGCGATGTGGCTTATTCCAGAGCATATCGTGTTCCAGACTGCAGCAACAAGGACCTACAAGGAAACATTCCAGAATGCACTACCGGCAGGATTGACTATGAGGTGGACTTGGAGAGGAAGGAAGTGCATATAAGTGTGTCAGACATGCTGGAGGACAAGGACTACCATGTTAGACTCTGCCACAAGGATTACATCTGCGCTGGCACTGGAGCTCACGTATTGATAAAAAAGGAGAATCCAGTGAAAAATGTAACTCTGAAGTACTCCAAACCAGTGCCCTGCTTGTGCATTGAGGGCTGGTCTGCCATGACTGATGCTTCTCGGCTTCAAGTCTGCCCTTTCAAAAACCGCGTTGAGGAACTCTGGTCTGGGATAACCTTTGACCCTGAGGAGGAGACTCTGTCATGGGAAGCTTCATGCCAAGTTAATGCTGTCATCTCGCTGTGTGAGCTGCAAGACCAAGGCGTGTGCCAAGACCTTGCCAATTCTTCTCAGAGATATGTCAAAAGAATGGTGACATATTCAGCAGTGGATCCTCACCCTCGGCTTTGCATGAAGTTCGTCACAGAGACCGGGGCATGGATAAAGTGCCCATTTTCAGATGGGAATTTCCCAGCCTGGCAACTAGAAATTTCTACTGAAGAGGACCAGCCACAGCTGCTAGTGACTTCCCGGGTCAAAACAAGCTTgtctttgagtgtgtgttccaAGACTGGGGACTCTGGGTGTGAGGACACACAAACCATCTTAGTTGATGTGGAGAAATTTAAACATGTCCAGCCAAATCTGGCTATGGATCTTTGCACATCAGGTCTCTGCATCAAGGCAAAGCGTATGGATGTAAAATATGGAGTAACCACTCTCTTTTGCCAACCCTCATGCCCATGTTCTTCCTCCAAGCCCTCAGACAGTAACAGTAAATGGCAGCTCATGTATTTCATTGTGCCAGCAATGACACTAACTACAGCTGTAGCCGTGGCTGCTGCTGTGATGACCATTGCGATGATTGGTTACTGCGtcaaaaggaaaataaagggTCGGGGCATTGCCCACTTACCAGGACCAcacacagCCTTATTCTCTCCAATGACTGAGGAGGTGAACTCAAAAACTCAGCTGATGTCCACAACAGTACTTGATGATGGAAATAGCTCAGAAAGCTCTCAGTTACGAGACTCTGAGAGGTCCAATCTACTGAATGACTTCACAAACCACTTAGAAGTGTAGCTCTGAAGATGGCTTAAGATGGAATgtgccattttcattttactttgcATTTCATGTTTCTGTATTGGGgtcaaaatgggaaaaaagtggaaaggTTATATTCTTAAAACATACCACAGAGattattttgtatgtttattgttattgatCATGTATTTTGATGTGGACTGTTATTCAGAATGAccattttgcactttatttctctcttggTGTGTAATTTAATGAGAGTGGAATTACACCATGATATTGTAGAacacttatacagtatatattaataatctactgtaaaataaacagacttcagagcaaaaaaaaaaaaaaaagacaccatcCAGCTTTAAAAGTCTTCAAACCTTCAAAACTTTTAAAAGACTGCTGTGTATATTTCTGCTTTTGTGTTACAGAGcagaatacatttatttatgtgatATGTGTGGTTTATATTCTTGTGAGATAGActtatttttttacttgtttctATTCTTGAATGTCATTGTTATCTTGAAATGGTTTGCTATAGGTCATGTTTAAAGCTCTCAACACTGCCATTTTGCATGTGGAAGTTCTCAATAAATTGCTTCACATG

Function

symbol description
il17rel Predicted to enable interleukin-17 receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; integument; intestine; and muscle. Orthologous to human IL17REL (interleukin 17 receptor E like).

NR:

description
uncharacterized protein LOC110490154

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922749.2 True 2386 mRNA 0.43 18 16568695 16581436

Neighbor

gene id symbol gene type direction distance location
LOC113531729 pim3 coding downstream 115756 16449786 ~ 16452939 (-)
brd1a brd1 coding downstream 179214 16369669 ~ 16389481 (-)
cerk cerk coding downstream 789751 15756306 ~ 15778944 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding downstream 1004979 15554273 ~ 15563716 (-)
alg10 alg10,LOC108427075 coding downstream 1023812 15539057 ~ 15544883 (-)
LOC113531895 usp15 coding upstream 40667 16622103 ~ 16647682 (-)
LOC113532402 LOC108279763,LOC108425342 coding upstream 67636 16649072 ~ 16662362 (-)
kdm5a kdm5a coding upstream 82491 16663927 ~ 16685402 (-)
LOC113531734 akr1d1,LOC108425343,LOC107094558 coding upstream 106937 16688373 ~ 16699456 (-)
LOC113532119 LOC108279527,LOC105916192,LOC105029310,LOC108425345,LOC107729772,LOC107666172 coding upstream 187834 16769270 ~ 16771695 (-)
G283546 NA non-coding downstream 118929 16448439 ~ 16449766 (-)
LOC113532372 NA non-coding downstream 272505 16294880 ~ 16296190 (-)
G283503 NA non-coding downstream 328794 16239515 ~ 16239901 (-)
LOC117599449 NA non-coding downstream 486574 16078768 ~ 16082121 (-)
G283307 NA non-coding downstream 526116 16042362 ~ 16042579 (-)
LOC117599589 NA non-coding upstream 37276 16618712 ~ 16619718 (-)
G284003 NA non-coding upstream 460191 17041627 ~ 17043280 (-)
G284131 NA non-coding upstream 925440 17506876 ~ 17507145 (-)
G284134 NA non-coding upstream 932174 17513610 ~ 17515240 (-)
G284135 NA non-coding upstream 939990 17521426 ~ 17523643 (-)
alg12 alg12 other downstream 161832 16400921 ~ 16406863 (-)
LOC113531972 muc19,LOC108280038 other downstream 1384620 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4815782 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 4908368 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 4980671 11586304 ~ 11588024 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 257099 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 377076 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1397327 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1446298 18027734 ~ 18067585 (-)
tmem209 tmem209,LOC107658886,LOC107725925,LOC107583965 other upstream 1487162 18068598 ~ 18082361 (-)

Expression


Co-expression Network