cerk (cerk)


Basic Information

Item Value
gene id cerk
gene name cerk
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15756306 ~ 15778944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923051.2
TGCGCGGTGACGCAGGTGAGTCTTTGCTTTTCGTTTTATTCTTAGAGGAAGCAGAAACCGCTATGCGTGGACAGCGCGGAGGACTGCGAGCGCTCTAACCGAGCCTGCGGCTTTGAGTAGCTTGTTAAGTTCGTTCCCAAGATGAAATTCAGATAACTAGGGTTTACAGTGGGCCGTGGCTGCGGCTGGAAGAGTGTGTTCACGGAGAAATGCAGGAAAAGCAGCCGAAGCCGCCGCTGCTGCTGTTGTCCTCGCAGCTCAGCCTCCAAAACCGGGGCTATGAGGTGACCCTCAACAGCGCTTTTCTCTCCTGGAAGGAGGTAGAGACGAGACAAAAACGGACTGCTGCCAACATTTATGGTCCTCTGAAGGCTGcaggCAGCCACTACGTGCCAGTGTGTGAGATCATATCCGTCCAGGAGACGGAGGAAGACTGCCCGAGCACAGGCATAGGAAAGTGGCAGAAAGTTCCACAAAGTCTAGCTGAATCTAACCAGTATGCTTTCACAGTGTCCTATGTGGAGAGGACTCAGAAACACCGCTGGCGGTGCAGTGAAGTCACCCTCCATTGCACTGATAGAACACTGTGTCTGCAATGGGTCCAAGCCATCAGGGAGCAGCTCTCACTATTGACTATCCGCCCGAAGCGCTTGCTGGTCTACATAAATCCCTATGGAGGGAAGCACCGTGGGAAAAGGATTTATGAGCAGAAAGTAGCCCCAATTTTTTCCCGTGCCTCTATTTCCACTGACGTGATTGTTACAGAGCGGGCGAATCATGCCAGGGACCACTTGAAAATGGAGGCTGATCTAAAGAAATACGACGGGGTGGTTTGTGTTGGAGGAGATGGCATGTTTAGTGAAATCATACATGGCCTAATCTCCCGTACGCAGTGTGACTCCGGTGTAGACCAGAACCGTGCAGACGAGACTCTGATACCTTGCAGCCTTCGTATCGGCATCATTCCTGCAGGTTCGACTGACTGCATATGCTACGCAACGGTCGGCTCTAATGACCCCGTGACCTCAGCTCTGCACATCGTTGTGGGAGATTCCCAGCCAATGGACGTCTGCTCCATCCACCATAACAACACCTTTCTCCGCTACTCTGTCTCACTGCTTGGTTACGGTTTCTATGGCGACGTACTGACTGACAGCGAGAGGAAGCGTTGGATGGGCCCAGCTCGCTACGACATCTCAGGTGTTAAAACGTTTCTGTCACATCGCTATTATGAAGGGACGATCTCTTTCCTCCCTGCTGATGAGAACGTAGGAACTCCGCGTGACAAGCTGCAGTGCCGATCTGGGTGTAATATCTGCAGGCTACCTTCAGCAGACAAGCAGGTTTCCAAAGATGAGGAGAGCATCTCAGATACCGagaaaaaaggagTGTGGCAGGTCATCAGGGGAAAGTTTTTGGCCATCAATGCTGCATGTATGAGCTGTGCTTGTCCTCGCAGTCCCAAAGGCCTGTCTCCTGCTGCACACCTGGCCGATGGCACAGCTGACCTCATCCTGGTGCGCAAGTGCTCACGATTTGATTTCCTGCGCCACCTGCTGCGTCACACCAACAAAGACGACCAGTTTGACCACCCGTTTGTGGAGGTGTACCGTGTGCGACAGTTCCGCTTCACGCCCCGGTACGAGGATACTGACTCTGAGCTGGAGCTGCGGGAGGCTGAGGGCTCTGGTCGTAAACGCTTCTTCAGCCAGATATGCAGAGAGCATCCGGCATGCACTTGCAGCCTGGCGCACAGCAGCTGGAACTGTGATGGAGAAATCCTGCCTCATGCTGCCATTCAAGTCAGAGTGCACTGCCAGTTGATCAAGCTGTTTGCGAGAGGGATTGAAGAGCAGTCCGTCTTTGAGGAACCTTACACTCTCAGTGCAATATAGTGCTGCCTGtcactggaaagaaaaaaaattaacttgcTGGACCATGAAGAATCCCCGACCGTTAGGTTCACATTTGGGTTAACAAGATGCTATTACAAGTTCCATTGcacatccatttatagtttttgCTGGAAGTGATGTCATTAGTTTGCTAGTATGCACCATGGTTGAATAGATAGCATCTAGCTGACTATTTATTGATCACTGATAATCACAATGGCAAAGGCTCAGATGGGTTAAACCTGTATCCCCACAgtattgatatttttttaacacattccTTCTTTTACAGTGACTAAATTATTGCTAATTATTTCTCTTACCCCACCCAACATGTTCTAAGTTTAACTGTGGAGCAtgatttctgtctgtcttcctctaTTGTCAAGCTGGCCTTGATGTTTCGGACAGTAGTATCCCAAAGTTTGAAcataatgtgcaaatattttctttactgAAAATGAAGTACTCAACATTATCCTGTCGTAGTTGCTGttattaaacataatatattTAGTTACTTCAA
>XM_034313186.1
TTTGCGCGGTGACGCAGGTGAGTCTTTGCTTTTCGTTTTATTCTTAGAGGAAGCAGAAACCGCTATGCGTGGACAGCGCGGAGGACTGCGAGCGCTCTAACCGAGCCTGCGGCTTTGAGTAGCTTGTTAAGTTCGTTCCCAAGATGAAATTCAGATAACTAGGGTTTACAGTGGGCCGTGGCTGCGGCTGGAAGAGTGTGTTCACGGAGAAATGCAGGAAAAGCAGCCGAAGCCGCCGCTGCTGCTGTTGTCCTCGCAGCTCAGCCTCCAAAACCGGGGCTATGAGGTGACCCTCAACAGCGCTTTTCTCTCCTGGAAGGAGGTAGAGACGAGACAAAAACGGACTGCTGCCAACATTTATGGTCCTCTGAAGGCTGgCAGCCACTACGTGCCAGTGTGTGAGATCATATCCGTCCAGGAGACGGAGGAAGACTGCCCGAGCACAGGCATAGGAAAGTGGCAGAAAGTTCCACAAAGTCTAGCTGAATCTAACCAGTATGCTTTCACAGTGTCCTATGTGGAGAGGACTCAGAAACACCGCTGGCGGTGCAGTGAAGTCACCCTCCATTGCACTGATAGAACACTGTGTCTGCAATGGGTCCAAGCCATCAGGGAGCAGCTCTCACTATTGACTATCCGCCCGAAGCGCTTGCTGGTCTACATAAATCCCTATGGAGGGAAGCACCGTGGGAAAAGGATTTATGAGCAGAAAGTAGCCCCAATTTTTTCCCGTGCCTCTATTTCCACTGACGTGATTGTTACAGAGCGGGCGAATCATGCCAGGGACCACTTGAAAATGGAGGCTGATCTAAAGAAATACGACGGGGTGGTTTGTGTTGGAGGAGATGGCATGTTTAGTGAAATCATACATGGCCTAATCTCCCGTACGCAGTGTGACTCCGGTGTAGACCAGAACCGTGCAGACGAGACTCTGATACCTTGCAGCCTTCGTATCGGCATCATTCCTGCAGGTTCGACTGACTGCATATGCTACGCAACGGTCGGCTCTAATGACCCCGTGACCTCAGCTCTGCACATCGTTGTGGGAGATTCCCAGCCAATGGACGTCTGCTCCATCCACCATAACAACACCTTTCTCCGCTACTCTGTCTCACTGCTTGGTTACGGTTTCTATGGCGACGTACTGACTGACAGCGAGAGGAAGCGTTGGATGGGCCCAGCTCGCTACGACATCTCAGGTGTTAAAACGTTTCTGTCACATCGCTATTATGAAGGGACGATCTCTTTCCTCCCTGCTGATGAGAACGTAGGAACTCCGCGTGACAAGCTGCAGTGCCGATCTGGGTGTAATATCTGCAGGCTACCTTCAGCAGACAAGCAGGTTTCCAAAGATGAGGAGAGCATCTCAGATACCGagaaaaaaggagTGTGGCAGGTCATCAGGGGAAAGTTTTTGGCCATCAATGCTGCATGTATGAGCTGTGCTTGTCCTCGCAGTCCCAAAGGCCTGTCTCCTGCTGCACACCTGGCCGATGGCACAGCTGACCTCATCCTGGTGCGCAAGTGCTCACGATTTGATTTCCTGCGCCACCTGCTGCGTCACACCAACAAAGACGACCAGTTTGACCACCCGTTTGTGGAGGTGTACCGTGTGCGACAGTTCCGCTTCACGCCCCGGTACGAGGATACTGACTCTGAGCTGGAGCTGCGGGAGGCTGAGGGCTCTGGTCGTAAACGCTTCTTCAGCCAGATATGCAGAGAGCATCCGGCATGCACTTGCAGCCTGGCGCACAGCAGCTGGAACTGTGATGGAGAAATCCTGCCTCATGCTGCCATTCAAGTCAGAGTGCACTGCCAGTTGATCAAGCTGTTTGCGAGAGGGATTGAAGAGCAGTCCGTCTTTGAGGAACCTTACACTCTCAGTGCAATATAGTGCTGCCTGtcactggaaagaaaaaaaattaacttgcTGGACCATGAAGAATCCCCGACCGTTAGGTTCACATTTGGGTTAACAAGATGCTATTACAAGTTCCATTGcacatccatttatagtttttgCTGGAAGTGATGTCATTAGTTTGCTAGTATGCACCATGGTTGAATAGATAGCATCTAGCTGACTATTTATTGATCACTGATAATCACAATGGCAAAGGCTCAGATGGGTTAAACCTGTATCCCCACAgtattgatatttttttaacacattccTTCTTTTACAGTGACTAAATTATTGCTAATTATTTCTCTTACCCCACCCAACATGTTCTAAGTTTAACTGTGGAGCAtgatttctgtctgtcttcctctaTTGTCAAGCTGGCCTTGATGTTTCGGACAGTAGTATCCCAAAGTTTGAAcataatgtgcaaatattttctttactgAAAATGAAGTACTCAACATTATCCTGTCGTAGTTGCTGttattaaacataatatattTAGTTACTTCAA

Function

symbol description
cerk Predicted to enable ceramide kinase activity. Predicted to be involved in ceramide metabolic process and phosphorylation. Orthologous to human CERK (ceramide kinase).

NR:

description
ceramide kinase-like isoform X1

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K04715 CERK; ceramide kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923051.2 True 2421 mRNA 0.49 13 15756306 15778942
XM_034313186.1 False 2420 mRNA 0.49 13 15756306 15778944

Neighbor

gene id symbol gene type direction distance location
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding downstream 192590 15554273 ~ 15563716 (-)
alg10 alg10,LOC108427075 coding downstream 211423 15539057 ~ 15544883 (-)
LOC113532250 NA coding downstream 419373 15325373 ~ 15336933 (-)
LOC113532267 muc19,LOC108280038 coding downstream 492913 15236542 ~ 15263393 (-)
LOC113532243 LOC108279995 coding downstream 519996 15213936 ~ 15236310 (-)
brd1a brd1 coding upstream 590725 16369669 ~ 16389481 (-)
LOC113531729 pim3 coding upstream 670842 16449786 ~ 16452939 (-)
il17rel il17rel coding upstream 789751 16568695 ~ 16581436 (-)
LOC113531895 usp15 coding upstream 843159 16622103 ~ 16647682 (-)
LOC113532402 LOC108279763,LOC108425342 coding upstream 870128 16649072 ~ 16662362 (-)
G283218 NA non-coding downstream 1701 15754317 ~ 15754605 (-)
G283081 NA non-coding downstream 234616 15517224 ~ 15521690 (-)
G283022 NA non-coding downstream 366205 15387948 ~ 15390101 (-)
G282999 NA non-coding downstream 402865 15350706 ~ 15353441 (-)
G282950 NA non-coding downstream 485106 15270994 ~ 15271200 (-)
G283307 NA non-coding upstream 263418 16042362 ~ 16042579 (-)
LOC117599449 NA non-coding upstream 299824 16078768 ~ 16082121 (-)
G283503 NA non-coding upstream 460571 16239515 ~ 16239901 (-)
LOC113532372 NA non-coding upstream 515936 16294880 ~ 16296190 (-)
G283546 NA non-coding upstream 669495 16448439 ~ 16449766 (-)
LOC113531972 muc19,LOC108280038 other downstream 572231 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4003393 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 4095979 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 4168282 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 4496894 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 621977 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1059591 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1179568 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2199819 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2248790 18027734 ~ 18067585 (-)

Expression


Co-expression Network