tmem214 (tmem214,LOC104961504,LOC106608390)


Basic Information

Item Value
gene id tmem214
gene name tmem214,LOC104961504,LOC106608390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11053196 ~ 11065947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923287.2
ACGTGATGACGTCATGCCCCCAGAGCAGACGTGGCACAGAGACGGTTTAAAGTCGCAGCTGTAGCCAGAGCTGACCTGCCACCATTATTCTGTACACCAACTCTAGGGGAATTAAAGGCGTTTAAACAAAAAGCACTCGAAGGCtttcctgctttttttaaacGCTCAGTAAACCATGGCTTCGTCTGCGAATAATAACGGTTCTGCTGGTAAATGGGAGGTGGTGAGACGAGGCAAGAAACAGAACAGCGCTGCCAAGAGTCAAGCCGACAAGAAGTCCAGGAAAGCTCTGAGCGAGTCTAACTCTCCAAAACTTGACCTGTATCCATCTGTAAAGATGTCCGAGACAATATTTGAGGGTTTCGAGAAGATCGGAAAGAAGCAGAACAAGGAACAGGTTCCTCCCCCGGCTGAGACTCAACAGAAGAAGCTCAACGCAGCAAAGCAGTCCAAGAAATCCCAGTCCAACAGCAGCTCAAAACCGACCCACTACAAAACATTGGAGGAAGCTGTCAAAGCTCTGGATGTGGTGGAGTTGAGGCAGCAGCTGGAGAAAAGTCAAGTTATGTTCCCTGAGAATCCATGTGTCTGGGTGAAGGATCTAGCTGGGTATCTCAACAGCAAACTGCTCGCGCCTGACACAGATCCCACACTCAGCAGTTATGCTCACGATTACCCATACTGCCTTGCTGGAAAGGATCTACGCAACATAATTAAGAATCTGTTGGGGAAAAGCGGTGACACGCTACAAGAATTCTTTGATCACTGTGTCCTCACCATGCTCCGGGAGTTGGATAGACCAGCAGctgAACCACTGCATGGCTACAGAATGTGCATTCAGGCCATCATGATGAACAAACCCAAAACAGCCACGCTCAACCTGCCTGAACATCTGGAGCTGCTGCGCTCTCACCAGAACCGTCCAGCCAAGTGTCTGAGCATTATGTGGGCTCTTGGACAAGCTGGCTTCTATGACCTTACCCAAGGCATAAGAGTTTGGCTGGGCATCATGCTCCCTGTTCTAGGAGTGAAAACCCTGTCTGCCTATGCCATTGCATACCTAGAGAGATTGCTCACGCTTCATGCCAATCTGTCTAAAGGGTTTGGGGTAATGGGCCCAAAAGAATTCTTCCCTCTGCTGGATTTTGCTTACATGCCCAAGAATGCTCTGTCGGCAAGCCTGCAGGAGCAGTTGAGGAGGCTCTATCCACGGCTGAAGGTTCTAGCATTTGGAGCGAAACCGGAATCCACATTGCATACCTACttcccttcctttctctccagaGCCACGCCCAATTGTCCTGATACCATGAAGAAAGAGTTGCTGAGCAGCCTGACCGAGTGCCTTTGTGTAGATGCACAGAGTTTGGGTGTATGGAGGCAACTTTACACTAAACACCTCACTCAGTCCAGCCTCTTGTTGAATCATCTGCTCAGTTTATGGAGCACGCTCCCACCAAAGttGCGAAACAGCCTTCAGGAAACAATTCAGTCTTTCAGAGTGACCAATGAAGAGATTAGGTCCATAGCTAACTTGGATGACGTACAGGAATGCAGCGTTGTATGCAGtTCTCTGCAGATGAAAATTCGCTCTCAGGGGTTCCCCTGGTCACGGGTGCTGATGGTGCTGCTGGTGTTTGTTGCCGGTTTCATTGCTCATGATGTGAGATCTCATGGCGCGTTTGCCGACTCTACCACAGCGCTGTACCTGCAGAAGAGCGGAGTCACTGCAGTATCCCAGCAGGCCTGGAGAAAAGTGTCCCATTACAGCCAGCAGGGCATCAActggttAGCTGAGACTATGCCATATTATTACTCTCTGGCTGTGGAGGCAGTGGGTCCCTTtttggaagccattttggagAAGCTAAAGGTGGCTGCAGTCTTTATTGCACAGAAGAGTTCTGAACTGATACTGTGGCTGCAGGAGAGCACACCACTCCTCGTAGAATGGATCAATGCCAACACCCCAGAGAGTGTTTTCCAGTTTTTGCAGTTTGTTAaggagctgctgctgtttgtgCATCAGAACTACATCCTCCCCGGCCTGCAGTACGTCGTTACAGCTCTCCAGCATCTTTGGCAGTCACTGCAGGACTCCTGCAATGGTGAAGTATCACTTCTCTGCATGCAGAACCATGTGGTGGCATTCACCAATAGCACATGGATTTACTTGCAAGATACAACAACAGCCATCAGGAGCTGGGCCCAAGAGCTGCTGTCCAAGGCATGATACACGCCCAGAATAGGGGACAAAGACTGTCTTTATTTGCGTCTACCCTCTCGCGCTGGGCTGTAAAGACTGTAGGATGCTTTTCCATCTAAATTTCTCAAATTCGGAGGACTCGACAGGAGGTGGAACACTTaccagttgttgttttttttttttttttttttttttttttttctgtccccCACTACATTATTTGGTACTCCACCCCCATCCCTCAATTTCAGGACTTTTTATATGATCAATACCTACAAATTTTTCTGAGTGTTCCTTTTCATCTCTTGTGTTTTACTTAGGTGACTGCagatacaatatttattttatgtatgtactaataaaacaaaagactACAAAAGAGGCTGCTGGGTTAATTGGATATGAAAAGTGCTGAATGATGCAggacacacattttatattaagCAGCACATCTGAGGTTTTGCTGGAGAAATATCTGAACAGCTACTGTATAATAAAGCAAAACACAGCATAATTTGATATTAAATTCGACCTGGAGCAAATTTACTCACGAAATATGCACTTGAACACAAAAGCCTTAagcattttgtgttttaaaggtTTACACATTGTTGGCAACAATTATCTAAGATTTCACTTTTTTGTGCCAATTTACGTATAAGCAAACTGTTCTAGTGCTTCTATTCCCTATTTGCGCATTCAGTTTAAGATGCCTGTCAAAGATGCAGTTTAATCTTGTTTAATTCTAGCAGCTTATTGCATTTCAAATACAGCAGCACACTGAGGTTCTAGCGATGAGGCATTCCATGGCTATGTGACCAAACTTTCCTCCTGGATGTTAGTGTTGGACCCTGTGTGCTGGTGGTCACCTGCTGGATCTGTAACTTATCTAGCTCACATAAGTGAACTCATTCCATTCACAGCAATAGTCAGAAAGTTTTCCATAAGTAATGTCTGTGAAAAAAATTGTTGAGTATTTTATGTGGAAACATTGCCATTGGAAAACTTTCTGAGCATGCCATGATTTAATATAGAAAGTCATTCAAGCATAATACctgattttctttgtagaaATGCTTAGTGGTTGATTTGATTTGGTGGTcatgaagtttttttgtttgtttgtttgttttttttaaagatttacttACTGTGCGCCTCACTCGCCCACTGTTTCTCAGTATCGGAGAAGTTTTGTGGTGATTACTGTTGTTATCGTCTGCAAGTCTTCTACTTGATTACCTTTTAATGTGATCTGGGAAGCTCTACTGAAGATAGAGAAGCAAGTTGTATATTCTCTACCCCTCACTCTCTGCAGCAAAGATTtgcataatataaataaaatgacaggaCATGGAGCTCCTTCTAGAATTGGAATTCTGCATTTGATGTGAAGTTTGCCTCCTGTGTTTGTTTCTAGAGGCTACATCTGTGCGGTACACCATAATGTTCAAGTGTCAAAAGGTGTAATTAAGATTTTTAGCACTGTATCTGTAATGGTTATCAGCCAGCTGTGTCTGGTTAAAGACAGATTCAGGATTAGACTGTAGCCCCACCTCTTAACATAACAGGGCTGGAAGTACAGATTACACCAtggaagaggaaaagagaaataatataaatgtgatTAACTAATTTTGTTGCTTTGTATAAatggtttataaataaattaataaaatctgtGCAGCCCTGCTCATGGCA

Function

symbol description
tmem214 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

NR:

description
PREDICTED: transmembrane protein 214-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923287.2 True 3907 mRNA 0.44 16 11053196 11065947

Neighbor

gene id symbol gene type direction distance location
agbl5 agbl5 coding downstream 2590 11035084 ~ 11050606 (-)
LOC113531821 gen1 coding downstream 24791 11012219 ~ 11028405 (-)
msgn1 msgn1 coding downstream 43564 11008342 ~ 11009632 (-)
LOC113532419 lgr5 coding downstream 78500 10941118 ~ 10974696 (-)
tmem19 tmem19,LOC102798963,LOC106594838 coding downstream 113094 10931347 ~ 10940102 (-)
mapre3b mapre3,mapre3b,LOC108425644,LOC107594695 coding upstream 1790 11067737 ~ 11076762 (-)
rsph9 rsph9 coding upstream 263081 11329028 ~ 11344755 (-)
tmem63a tmem63b coding upstream 290113 11356060 ~ 11380183 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding upstream 360111 11426058 ~ 11441607 (-)
ccnc ccnc,LOC107579661 coding upstream 378163 11444110 ~ 11454450 (-)
G280652 NA non-coding downstream 122216 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 144566 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 268903 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 275299 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 582821 10468686 ~ 10470375 (-)
G280812 NA non-coding upstream 103939 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 113984 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 117119 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 193844 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 293415 11359362 ~ 11359636 (-)
si:ch211-51e12.7 LOC108280090 other downstream 46053 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 756998 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1160810 9878481 ~ 9892386 (-)
G279415 NA other downstream 1844633 9207351 ~ 9208563 (-)
G278912 NA other downstream 2833516 8218561 ~ 8219680 (-)
sobpb LOC108279441 other upstream 13221 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 172988 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 520357 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 591943 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 655116 11721063 ~ 11752913 (-)

Expression


Co-expression Network