LOC113532250


Basic Information

Item Value
gene id LOC113532250
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15325373 ~ 15336933 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923541.2
TGAGCTCGTGCACTTTGCTCGCGGTTGTAGCTGCTAATTGGTTAGCATTAATGTATCGCTATTGCTGCTAGTTTACATTACTCTATAACTAAAGTTACTAATTAGCTCCTGTCAAGACCTgtcaagacatttatttatctaacaAAAGATATTAATTACTAAGACATTGAAAATTTACtgtctttattaattaattaaattaaattaaaatatttatcaagctagctagctgacgaGTTTCTGAACATGAACTGGGTAGGAGGTTGGAGAAGCCGTGTTATGAAAAGCAGTGACACGAGAAAACAAAAGGAGttttttgaaaagaaaaggaTGCAGAACAGACATAATGTCTTGGCACCGCCACCAGCATCACCTAAGAAGGGCAATGTTGGCAACATGGATTTGCTTACAATGTTTATTGTAAACCAGATCGCATTaaagaaagaacacactggtaaacctaaattaacacatttaccTAAATCAAAAGGAATTCATAAATCTATGGGTGGGGAGTCTTTAGAGCTGCCAATGAGTCCTTGTTCTCCATCACGCTTGAGCCTGGCGGAGAGTGAATCGCACTACAGTGACCAAACACTGGGTTTGAAGAAGAGAAAGCTTAGCTTCCTTGAGGAATTCAGGTTCAAGACGCTGTCACCGCTGCTGGAAACCAACCTGTCTGACAATAGTACTTCAGCGTGTCAGCACCGGGTTCAGGGCAGTGTCGGTTCCTTTTCTTCAGCCTCACCGTCCTCATCTGAGGCCTTCAACCTCCAGTCCAGGCCCACTGTACACATCTCCCCTCCACCACCAACAGAATCACGCTGCACAAAACCTGCTCAGccaatgggtgtgtgtgagtataatCCTTGGACAGTGCCTTATCAAACAGAGGCCTCCCAGACCAGCTTTGCAGATGGAGTCCAGTTTGGGAGAACCTTACAGAGcaGAGAAAGCAGTGGGCCTTCCATACATTCTGCTGAAAACCCATTTAATGATTTAGAGACGAATGACCAAGAAGAAGAACCACACTTTTTTGGACTTAACGGAGGTGAAGAGCATGTGTCAGGATGTGTTGACTGTAGACCCTGCAGGGTACACAGAATTGTCTCAGAGCATGCCTGTGAATCACCAGTAACCTGTCCTCGCGGAGAGGGCTGTGTCACCTCAGACGATGTAACAAACTCTATTCCATCTCTCAGATACATTTTAgaagagggaaaaaagcagGACGGTGATTCCTACATGCAGATGTGCCACTTTAAGGACATTCTGACAACAAGCCAAAGTTGTCCATCAGGGATGCATGCTCCAACAAGACTTATGTCCTTCAACCAGAATTTCATGTGTAACCATGAACATAGAGAGAGGAAGAGTAAAGCCCATGGGATTTCAAAAACCTTGAGCTGGATCAATCACGAACAGGACTGCGAGGAGGATCAGTTTGTTCCCTCTTGTCTGCAGACTAATACACAAAGTggtaaaatgcataaaaaggcATCTCGCAGGACACAAGACAAGGCGACCCAGACTGCAGGTTTTTCCAGTTTGGCTTCTCAAGATGCCTCAGTGCAGTGTCGCCTTTTGAATGCAGCTAGGTTGAGTATTTTCACTGAGCCCACAACTCACATTCACCACAGAAGAACACAAAAATCTCCAACAACTAGGAGGCAGTCTCGTCACAGCAGTGAAAATCATGGTAATCAGTTTGCTCTATCAGAAATCCATAAGGTAGAGTTGAACACCTTCTGGATGACATCAGAAAGGGAGCCTACAAAGCAAGGTCCAGAAACAGTCACAGGACATGAAAGTTTGAGCAAATCTGAGAGCCAGGCATGCATGAAAAAACATCCATTACTGCACTGCTCTCACACAAATGCCCCAGAGCTAAAGGAGCAGCTATCAGAGAACATGGTGTTGAGAGGAGAAAGGTGTGAAGGTCATGAGGAGAAAAGTGTGAATCAAAACCCCACTGTGAACTCCAGCTGCACAGAGGAACATGACAATGCCTTCGCTGCTGAAACAGGTGGAGACAGGGTATCTGAGGgaaagggaaatcttaaagaaATTGCAGACATTCTGCTCATGCTGAAGCAGAAAAGTAAGCATCCATAAAAATGTGAGAGAGATGACTCGGAcctgttttgtttgttgaaaGTTAGCATCTGTTATCAGAAGGTTTATAgttgtgtgtgtcacactgGCTTCCTTTTGGATGGTTCAGTTACAGTAATCAATACTGGAAATCAATACTGAAAACCAAAAGCTTACTTCAAACAGTGGACgacttt
>XM_034313283.1
AACGTCGGGGAACACCAGCGCAGCACTTTAGCGGTGATGAACACCACCAGGCCGGCTAGCAGCGTGGGCCCTGTGGCCCCGGCGCCGCGCGACCTCGCCGTCTGGATGAGCGTGTATGAGAAGCCGTGTTATGAAAAGCAGTGACACGAGAAAACAAAAGGAGttttttgaaaagaaaaggaTGCAGAACAGACATAATGTCTTGGCACCGCCACCAGCATCACCTAAGAAGGGCAATGTTGGCAACATGGATTTGCTTACAATGTTTATTGTAAACCAGATCGCATTaaagaaagaacacactggtaaacctaaattaacacatttaccTAAATCAAAAGGAATTCATAAATCTATGGGTGGGGAGTCTTTAGAGCTGCCAATGAGTCCTTGTTCTCCATCACGCTTGAGCCTGGCGGAGAGTGAATCGCACTACAGTGACCAAACACTGGGTTTGAAGAAGAGAAAGCTTAGCTTCCTTGAGGAATTCAGGTTCAAGACGCTGTCACCGCTGCTGGAAACCAACCTGTCTGACAATAGTACTTCAGCGTGTCAGCACCGGGTTCAGGGCAGTGTCGGTTCCTTTTCTTCAGCCTCACCGTCCTCATCTGAGGCCTTCAACCTCCAGTCCAGGCCCACTGTACACATCTCCCCTCCACCACCAACAGAATCACGCTGCACAAAACCTGCTCAGccaatgggtgtgtgtgagtataatCCTTGGACAGTGCCTTATCAAACAGAGGCCTCCCAGACCAGCTTTGCAGATGGAGTCCAGTTTGGGAGAACCTTACAGAGcaGAGAAAGCAGTGGGCCTTCCATACATTCTGCTGAAAACCCATTTAATGATTTAGAGACGAATGACCAAGAAGAAGAACCACACTTTTTTGGACTTAACGGAGGTGAAGAGCATGTGTCAGGATGTGTTGACTGTAGACCCTGCAGGGTACACAGAATTGTCTCAGAGCATGCCTGTGAATCACCAGTAACCTGTCCTCGCGGAGAGGGCTGTGTCACCTCAGACGATGTAACAAACTCTATTCCATCTCTCAGATACATTTTAgaagagggaaaaaagcagGACGGTGATTCCTACATGCAGATGTGCCACTTTAAGGACATTCTGACAACAAGCCAAAGTTGTCCATCAGGGATGCATGCTCCAACAAGACTTATGTCCTTCAACCAGAATTTCATGTGTAACCATGAACATAGAGAGAGGAAGAGTAAAGCCCATGGGATTTCAAAAACCTTGAGCTGGATCAATCACGAACAGGACTGCGAGGAGGATCAGTTTGTTCCCTCTTGTCTGCAGACTAATACACAAAGTggtaaaatgcataaaaaggcATCTCGCAGGACACAAGACAAGGCGACCCAGACTGCAGGTTTTTCCAGTTTGGCTTCTCAAGATGCCTCAGTGCAGTGTCGCCTTTTGAATGCAGCTAGGTTGAGTATTTTCACTGAGCCCACAACTCACATTCACCACAGAAGAACACAAAAATCTCCAACAACTAGGAGGCAGTCTCGTCACAGCAGTGAAAATCATGGTAATCAGTTTGCTCTATCAGAAATCCATAAGGTAGAGTTGAACACCTTCTGGATGACATCAGAAAGGGAGCCTACAAAGCAAGGTCCAGAAACAGTCACAGGACATGAAAGTTTGAGCAAATCTGAGAGCCAGGCATGCATGAAAAAACATCCATTACTGCACTGCTCTCACACAAATGCCCCAGAGCTAAAGGAGCAGCTATCAGAGAACATGGTGTTGAGAGGAGAAAGGTGTGAAGGTCATGAGGAGAAAAGTGTGAATCAAAACCCCACTGTGAACTCCAGCTGCACAGAGGAACATGACAATGCCTTCGCTGCTGAAACAGGTGGAGACAGGGTATCTGAGGgaaagggaaatcttaaagaaATTGCAGACATTCTGCTCATGCTGAAGCAGAAAAGTAAGCATCCATAAAAATGTGAGAGAGATGACTCGGAcctgttttgtttgttgaaaGTTAGCATCTGTTATCAGAAGGTTTATAgttgtgtgtgtcacactgGCTTCCTTTTGGATGGTTCAGTTACAGTAATCAATACTGGAAATCAATACTGAAAACCAAAAGCTTACTTCAAACAGTGGACgacttt
>XM_034313284.1
CATCAACCGATTTGTAACGACTGCCTGAGCTCGTGCACTTTGCTCGCGGTTGTAGCTGCTAATTGAAGCCGTGTTATGAAAAGCAGTGACACGAGAAAACAAAAGGAGttttttgaaaagaaaaggaTGCAGAACAGACATAATGTCTTGGCACCGCCACCAGCATCACCTAAGAAGGGCAATGTTGGCAACATGGATTTGCTTACAATGTTTATTGTAAACCAGATCGCATTaaagaaagaacacactggtaaacctaaattaacacatttaccTAAATCAAAAGGAATTCATAAATCTATGGGTGGGGAGTCTTTAGAGCTGCCAATGAGTCCTTGTTCTCCATCACGCTTGAGCCTGGCGGAGAGTGAATCGCACTACAGTGACCAAACACTGGGTTTGAAGAAGAGAAAGCTTAGCTTCCTTGAGGAATTCAGGTTCAAGACGCTGTCACCGCTGCTGGAAACCAACCTGTCTGACAATAGTACTTCAGCGTGTCAGCACCGGGTTCAGGGCAGTGTCGGTTCCTTTTCTTCAGCCTCACCGTCCTCATCTGAGGCCTTCAACCTCCAGTCCAGGCCCACTGTACACATCTCCCCTCCACCACCAACAGAATCACGCTGCACAAAACCTGCTCAGccaatgggtgtgtgtgagtataatCCTTGGACAGTGCCTTATCAAACAGAGGCCTCCCAGACCAGCTTTGCAGATGGAGTCCAGTTTGGGAGAACCTTACAGAGcaGAGAAAGCAGTGGGCCTTCCATACATTCTGCTGAAAACCCATTTAATGATTTAGAGACGAATGACCAAGAAGAAGAACCACACTTTTTTGGACTTAACGGAGGTGAAGAGCATGTGTCAGGATGTGTTGACTGTAGACCCTGCAGGGTACACAGAATTGTCTCAGAGCATGCCTGTGAATCACCAGTAACCTGTCCTCGCGGAGAGGGCTGTGTCACCTCAGACGATGTAACAAACTCTATTCCATCTCTCAGATACATTTTAgaagagggaaaaaagcagGACGGTGATTCCTACATGCAGATGTGCCACTTTAAGGACATTCTGACAACAAGCCAAAGTTGTCCATCAGGGATGCATGCTCCAACAAGACTTATGTCCTTCAACCAGAATTTCATGTGTAACCATGAACATAGAGAGAGGAAGAGTAAAGCCCATGGGATTTCAAAAACCTTGAGCTGGATCAATCACGAACAGGACTGCGAGGAGGATCAGTTTGTTCCCTCTTGTCTGCAGACTAATACACAAAGTggtaaaatgcataaaaaggcATCTCGCAGGACACAAGACAAGGCGACCCAGACTGCAGGTTTTTCCAGTTTGGCTTCTCAAGATGCCTCAGTGCAGTGTCGCCTTTTGAATGCAGCTAGGTTGAGTATTTTCACTGAGCCCACAACTCACATTCACCACAGAAGAACACAAAAATCTCCAACAACTAGGAGGCAGTCTCGTCACAGCAGTGAAAATCATGGTAATCAGTTTGCTCTATCAGAAATCCATAAGGTAGAGTTGAACACCTTCTGGATGACATCAGAAAGGGAGCCTACAAAGCAAGGTCCAGAAACAGTCACAGGACATGAAAGTTTGAGCAAATCTGAGAGCCAGGCATGCATGAAAAAACATCCATTACTGCACTGCTCTCACACAAATGCCCCAGAGCTAAAGGAGCAGCTATCAGAGAACATGGTGTTGAGAGGAGAAAGGTGTGAAGGTCATGAGGAGAAAAGTGTGAATCAAAACCCCACTGTGAACTCCAGCTGCACAGAGGAACATGACAATGCCTTCGCTGCTGAAACAGGTGGAGACAGGGTATCTGAGGgaaagggaaatcttaaagaaATTGCAGACATTCTGCTCATGCTGAAGCAGAAAAGTAAGCATCCATAAAAATGTGAGAGAGATGACTCGGAcctgttttgtttgttgaaaGTTAGCATCTGTTATCAGAAGGTTTATAgttgtgtgtgtcacactgGCTTCCTTTTGGATGGTTCAGTTACAGTAATCAATACTGGAAATCAATACTGAAAACCAAAAGCTTACTTCAAACAGTGGACgacttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923541.2 True 2291 mRNA 0.44 12 15325373 15333811
XM_034313283.1 False 2142 mRNA 0.46 12 15325373 15336933
XM_034313284.1 False 2087 mRNA 0.45 12 15325373 15333836

Neighbor

gene id symbol gene type direction distance location
LOC113532267 muc19,LOC108280038 coding downstream 61980 15236542 ~ 15263393 (-)
LOC113532243 LOC108279995 coding downstream 89063 15213936 ~ 15236310 (-)
LOC113532053 LOC108279522 coding downstream 186896 15122734 ~ 15138477 (-)
LOC113531721 iapp coding downstream 206812 15116227 ~ 15118561 (-)
pyroxd1 pyroxd1,LOC108279593 coding downstream 214108 15101356 ~ 15111265 (-)
alg10 alg10,LOC108427075 coding upstream 202124 15539057 ~ 15544883 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding upstream 217340 15554273 ~ 15563716 (-)
cerk cerk coding upstream 419373 15756306 ~ 15778944 (-)
brd1a brd1 coding upstream 1032736 16369669 ~ 16389481 (-)
LOC113531729 pim3 coding upstream 1112853 16449786 ~ 16452939 (-)
G282950 NA non-coding downstream 54173 15270994 ~ 15271200 (-)
LOC113532334 NA non-coding downstream 112118 15209348 ~ 15213255 (-)
G282718 NA non-coding downstream 219378 14812922 ~ 15105995 (-)
G282673 NA non-coding downstream 585936 14739216 ~ 14739437 (-)
G282649 NA non-coding downstream 594369 14715045 ~ 14731004 (-)
G282999 NA non-coding upstream 13773 15350706 ~ 15353441 (-)
G283022 NA non-coding upstream 51015 15387948 ~ 15390101 (-)
G283081 NA non-coding upstream 180291 15517224 ~ 15521690 (-)
G283218 NA non-coding upstream 417384 15754317 ~ 15754605 (-)
G283307 NA non-coding upstream 705429 16042362 ~ 16042579 (-)
LOC113531972 muc19,LOC108280038 other downstream 141298 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 3572460 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3665046 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3737349 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 4065961 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 1063988 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1501602 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1621579 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2641830 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2690801 18027734 ~ 18067585 (-)

Expression


Co-expression Network