msgn1 (msgn1)


Basic Information

Item Value
gene id msgn1
gene name msgn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11008342 ~ 11009632 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923658.2
CACCTGAGCtcatcctaacacacacacacacacacacgcacgcacacacacacacgcgcgcgctcATGGACGGCGCAGAGGTGGATCACCTGACCGCTAAACTTCTGGCGCAGTGGGACTGGAGGACTGACAGCCGACATTTCGGGGAGCAGAGCGGCTCCATCAGACGCACATGTTCCTCACCTGAACCCTCTGCCTCTCCCTGCTCCACctgttcctcctcctcatcctccacctccccaGAGGCTCCAGAGGCTCCAGGGGAAATGTTCTCGGATTATTCATACGCCGGAAGGAAAGCGGTGCAGACGAAAACCTCTAGACCCAAAATGTCGACGAAGAGGCGCATGAaggcgagcgagagagagaagatgcGCATGAGGAGCTTAGCTGAAGCTCTGCATCAGCTCCGGGATTACCTGCCTCCTGTCTACAGCCGCAGAGGACAACCACTGACCAAGATCCAGACTCTCAAATACACCATCGAGTACATAAAGGAGCTGTCGGAAATCCTCAGCCACCAGTGAAGCGACACTGAGAAGTTCATGGACACTGGTCTTTATCCTAAATCAGCTTGTATTCTGCGTGCCTAAAGAgattgtttgtacagaaatgtgCCATACTTCTGATGTAAATACTTGttttggcactttttttttcctattcatATCTTCCATATGCTAATCAAATATTTCAAGACAGAGATCATGGAATAAACCTTGTTTCCTTTTATTATAGAGCCTGTGTgtagtttatttgtttagttcATAGCCAATATGGAGCTTAGTAGTTTGTGTATGTAGAGTATAAATTAACACTGATATAGTGAGATTATAGGTCTATTAGGTCTAACCTGGGTATACTAGAGCTTTATACTGTCTGTTAAATGCTCTTAATCTCCAATATAATGTtttcaaatgacatttttttttaataagcagaTTCTTCTCTATCATtatgcatacagtatatgctgAAAATATAGCTTATAGTCTTATAGCTAGACTATATAAGTGATCTTCGCCAAGAGAGATACACTGTattcaggagaaaaaaatcaccacctgggacaaaacCATCTACGTGAATACAGCAAAACTCCTCCACAATAAGAAACGGTTTTAAAAATGCTTGCTGTGTGGATGTGGACGTGTAGTACGTGGATTTGTGTTTGTTGCAGTAAATAATCAGATTCTTTAcagtaaatgtactgtaaagGTACTGTAAAGGTTTAACTGTTATGTAACATGTATAACAGCCTACTGAATACATATAAACAATTTATGCTGAA

Function

symbol description
msgn1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within paraxial mesodermal cell differentiation; regulation of transcription by RNA polymerase II; and somatic muscle development. Predicted to be active in nucleus. Is expressed in fin; margin; mesoderm; myoblast; and tail bud. Orthologous to human MSGN1 (mesogenin 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007525 somatic muscle development biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0048342 paraxial mesodermal cell differentiation biological_process
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K09077 MSGN1; mesogenin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923658.2 True 1291 mRNA 0.43 1 11008342 11009632

Neighbor

gene id symbol gene type direction distance location
LOC113532419 lgr5 coding downstream 33646 10941118 ~ 10974696 (-)
tmem19 tmem19,LOC102798963,LOC106594838 coding downstream 68240 10931347 ~ 10940102 (-)
rab21 rab21,zgc:154045,LOC106609839,LOC107690748 coding downstream 79926 10913634 ~ 10928416 (-)
ptprr ptprr coding downstream 122906 10830886 ~ 10885436 (-)
ptprb ptprb,LOC107562139 coding downstream 179957 10784328 ~ 10828385 (-)
LOC113531821 gen1 coding upstream 2587 11012219 ~ 11028405 (-)
agbl5 agbl5 coding upstream 25452 11035084 ~ 11050606 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 43564 11053196 ~ 11065947 (-)
mapre3b mapre3,mapre3b,LOC108425644,LOC107594695 coding upstream 58105 11067737 ~ 11076762 (-)
rsph9 rsph9 coding upstream 319396 11329028 ~ 11344755 (-)
G280652 NA non-coding downstream 77362 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 99712 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 224049 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 230445 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 537967 10468686 ~ 10470375 (-)
G280812 NA non-coding upstream 160254 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 170299 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 173434 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 250159 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 349730 11359362 ~ 11359636 (-)
si:ch211-51e12.7 LOC108280090 other downstream 1199 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 712144 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1115956 9878481 ~ 9892386 (-)
G279415 NA other downstream 1799779 9207351 ~ 9208563 (-)
G278912 NA other downstream 2788662 8218561 ~ 8219680 (-)
sobpb LOC108279441 other upstream 69536 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 229303 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 576672 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 648258 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 711431 11721063 ~ 11752913 (-)

Expression


Co-expression Network