LOC113532343


Basic Information

Item Value
gene id LOC113532343
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12083126 ~ 12093099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923692.2
GCATGAACGCTAGGGGGGAGATATAGGACTCCATAGGGAGAAAGGAGTGTGGAACAAGAAAGTATGAGGAAATGAGTGTACTGAGACCAGAGGGTTAAGTCTGGATTGAAAATTCGACGACTTCAAGGGATTCTTGAGCCATCCTGACTTCTACTGCACATTAAGATCCACCTGCAGCACAACAGATCTGATGGTCAAATGGAGCTTGAGGATATATGTGATGACGTAGCTCACCTAGATTTAAACGAGATAGAAAGTGAAACAGGTACATGTGTGGTGATTGATgaggaaaatgaaatgcaaGTTGTTAAAACCAAGATGAGATTATGTAGGATTAAAGACTGTGAAGGCTGCAGCAACCTTCACCTGTGCAAACTGTACCTGTTTGGAGAGTGCCCATACAACACCAAAAGAGAGGAATGCCAGTTCAGCCATGACCTCTATTCAGAGCACAACATCGGCGTGTTGTGCCAACACAAACTGCTGGAACTGGACTTCAGTGAGCTGTCCCTTACACTTCTGCAAAATGACACCACCTTATTGCCTTCAGTGTGTTTGGCATACAACGAGGGCAGTGGTGAGTTTGGGAACTGTCTTGAGGCGGAGACCTGTAAAAATCTCCATGTCTGTGAGAACTACATCAGAGGAATATGTGACGGCAGCACTGGATGCAACAGATGCCATGATTTATATGAACCTCATCCATTGAAAACACTGCAGGACAACGGAGTGCCCAATCAGCTGATGGACAATTTATTATCAGTCTATAAGAGCATGCTTACCATTGCACTTGCAGACAGACCCAGCATTGACTGCAGTGCCATAGCACCAGAGAAATGGTGGATATGTCTTTTCCACTTCCAAGATTCCTGCAATTTGGAAGACGCATGTGAAAATGTGCATTTCTGTTTGCCCTATAAATGGGAGCAGTGGGATGGGCACAGCTGGAAAGTTCTGCCTGATAACGAGGAAATAGAAAGAGCGTACTGTGATCCCACTAAGACACACAGTGACAGCAGTGTACCTGTACACTTTGACACAATGACTCAGGGTTCTGTAGAGGTCCGTCGTCTCTCCACTATTTCATCAGTTCTGGATCCCAGCTTTGCCCTCACTACAAAATGGATCTGGTACTGGGAGGATGAAAATGGGGACTGGATCCAGTATGGATCATCACAAGGGACACACAATACATGTTCCATCACCAGTGAGTTCCTGGAGTGTAAATACCAAGAAAACAGGAGTCCTATCATCAAATTCACTACAGATGAACACTCTTATGTGGTCAATGTGGAAGACATGATTCAGTACAACACACAAATTAGCACCGAAATGCGAGTAAGGAGGAGACCCATGTTTCTCTCAGCAGAAGATGTCCAAAACATCATAACAAGAGAAATGGAATTGAAGGATCATTTGCAAAATCCCCAAGCTTTGCCTTGTGACTCGGATAAGGCCAATATGTCTGTAACTGGATTCAAGaGGGTTCTCCTGGACAGCAATACCGATGAATATAAGAAGATCGCTGAGTGCTTTTATCAGACAATGTCAGAGTTTATGGTGAAGAGCATTGAGAAGGTGCTGAATGAGGACTTATGGGAAGTTTATCAAAGGCATGtcagtgtgatgaagcagaaaaatgtAGGCAAGGAGAATGAAACACTCCTGTTTCATGGCACTGAGTCCAAACACATTGATGCCATCTGCCAGCAGAACATGGACTGGAGAATTTGTGAAGCACATGAGACAGCATATGGTAAAGGTAGTTATTTCACCAGAGATGCCAAATCCTCCCACAGCTACACTGACCAGTCTGGAACGCAGTGTATGTTCCTTTGCCGGGTATTCATAGGAGAGTATACCAACGGGCATCCCAGCTATATCCACGCTCCTCTGAAAGATGTGGAAAATGGCATCTACTATGACAGCTGTGTAAACGATATCAACAACCCGTCCATATTTGTTGTGTTTGAGAAACGTCAGGTGTACCCCGAGTACCTAATTCAGTATGAACAAAGAACAGGGAACAGTCCGCAACATGTCTCTTTTAATCAGTTCTCTTCAAGCAGTCAGGCTAGTTTCAGTGATCCATGTGTATCCAGTCAATGTTCTCCCCACTATTTCTTGCCACATTTTACTCCTGTGGTGCATTCCCCCTACTTTGCTCACTCAAAGAAAAAATACTTCCAAGGGGGTGCACCCCGGTTACCATTTCCTCTCCATTATAAGCCTTCCTTAGTCAGAAATTTTAGAATTAGCAATCCTACAAGGCCACCAAAACGACAAAGTTCACATAGAGGATTTGGGTCAACGCATTTGCCAGAAAACATTTTAGCTCATGCCAGGACCTCAGCATCAGTTAGAAAGGACACTGCAAAACAACTGGTTTCAAACTCAGTCAGGTCAGCTAATGAGTCGCGTCCAATGCCTTTGCCTACAACATTATCGACTGTTACTAAGGAATCAAAATCAGTTAAAACTCAGGATGGCAGACAACAAACATCAAATCCAACCAGACCATCTGGTCGATTAAGTCCAGTGAATTCTTCAGCAAGTGTTTCGTCTGATACCAAAACCACAAAGTCAGTTAAAGCTCTGAATGGCAAACACCAGGGCTCAAATTCAACCAAATCAAATAGTGGATTAAGTCCAGGGACTACTTCCCTGTATGTATCAGTCAGGTTGAGCACATCAACTCATACTGATGCTTCAAAGTCAGTTACAATTGAAAATGCCAGCGGAAAAAGAGTTTCTAGTCTCAGTACGGAAAGCACTAAACCTGCAGGTAAGAGCTCCAGAAGTTCTGatacacaaagcaaaaaacCTGCAGGTAAAAGCTCCAAGAGCTCTTATACACAAAGTACTACATCTGCAGGTAAAAGCTCCAGAAGCTCTGATACACAAAGTACAAAACCTGCAGGTAAAAGCTCCAAGAGCTCTTATACACAAAGTACTACATCTGCAGGTAAAAGCTCCAGAAGCTCTGATACACAAAGTACAAAACCTGCAGGTAAAAGCTCCAAGAGCTCTGCTTCACAAAGCACTACATCTGCAGGTAAAAGCTCTAAGAGCTCTGCTTCACAAAGCACTACATCTGCAGGTAAAAGCTCTAAGAGCTCTGCTTCACAAAGCACTAAACCTGCAGGAAAAAGCTTCAGAAGCTCTACAGGAAGGCATTAGTGCTTGTTAGTGTAGAAGCCTTCAACTATCTTAAAATGGTAGCTGTATTTCAGGGTATTCGTATGATACAGCCATTGCATTATTGaatgataaaatgaaatgtaagcAAAACTGATCTTTGAGGTAAATCTTTCATCACATTTCTATTCCTCATTGTAATCATTTGCTTTGTTGGAAGAAAGTGACTGATTTGCTGTTCAGCTGTGCAACaagcttttctttcttctagTTTGTACAGTATTCCCAACTGGCCCTCGTGGAGAATTTGATCTGGAAACAAATAACATTGTGATTAGTATTGGGTTATATCAATAAATGAGGCAAACAGCTAATTgtattctataataataataataataataataataataatagttttataaactattaaaaCCTTTCCACAGTCAAAATACGCAAAGATGTGGTGAAGAAGGCATGTTGTTGGGACccatttccatttccttttCCCATTCCATAAAGAACACctaagcaaaatatttttattatggcATATTGTAGACATTTAGGCAGTCAAATAATTTTCAGATTAAGGAAAACCACTTGAAATCAGCTCAATCTGATGAGATATGCATACGAACCTACATGGGCAATCGGGTTGGATTTTGAATTCATACTGTATGAATgaagtcataaaaaaaacagaaacctgATGCTAAtcctaacattaacatttctaaCCTTTCATACAAAgctgtgtaaattgttacatCTCATGTATGTGTGATATTATTAAACACCTTAAGGATTTT

Function

GO: NA

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation
ko00380 Tryptophan metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923692.2 True 3950 mRNA 0.41 12 12083126 12093099

Neighbor

gene id symbol gene type direction distance location
syn3 syn3,LOC108279673,LOC108412895 coding downstream 1355 11989144 ~ 12081771 (-)
ptpro ptpro coding downstream 157619 11865792 ~ 11925507 (-)
tbk1 tbk1 coding downstream 287201 11773891 ~ 11795925 (-)
gpr19 gpr19,LOC107707975,LOC107710070,LOC107658992,LOC107662212 coding downstream 314207 11760781 ~ 11768919 (-)
snap91b LOC108279885,LOC108443062 coding downstream 443395 11610133 ~ 11639731 (-)
LOC113532368 NA coding upstream 4422 12097521 ~ 12108662 (-)
LOC113532307 LOC108279675 coding upstream 17144 12110243 ~ 12122771 (-)
zgc:165507 slc16a7,LOC106609446,LOC103152572 coding upstream 161156 12254255 ~ 12272627 (-)
LOC113532409 NA coding upstream 270709 12363808 ~ 12367546 (-)
mapk12b mapk12b,LOC108279513,LOC108442322,LOC103035956,LOC107579544,LOC107656379,LOC103459704,LOC107710136,LOC103151778 coding upstream 276510 12369609 ~ 12374384 (-)
G281362 NA non-coding downstream 46764 12033096 ~ 12036362 (-)
G281102 lrp6,LOC102306404,LOC101476287 non-coding downstream 372142 11707690 ~ 11710984 (-)
G281075 NA non-coding downstream 493439 11589003 ~ 11589687 (-)
G281070 NA non-coding downstream 499489 11583393 ~ 11583637 (-)
G281057 NA non-coding downstream 521062 11561725 ~ 11562064 (-)
G281373 NA non-coding upstream 758 12093857 ~ 12094059 (-)
G281455 NA non-coding upstream 158215 12251314 ~ 12254155 (-)
G281486 NA non-coding upstream 275860 12368959 ~ 12369265 (-)
G281510 LOC108279795,LOC108442313 non-coding upstream 364464 12457563 ~ 12459092 (-)
G281527 NA non-coding upstream 383165 12476264 ~ 12477629 (-)
dusp16 dusp16 other downstream 330213 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 422799 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 495102 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 823714 11238935 ~ 11259412 (-)
sobpb LOC108279441 other downstream 988950 11079168 ~ 11094176 (-)
LOC113531972 muc19,LOC108280038 other upstream 3046826 15139925 ~ 15184075 (-)
alg12 alg12 other upstream 4307822 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 4745436 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 4865413 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 5885664 17978763 ~ 17988280 (-)

Expression


Co-expression Network