alg10 (alg10,LOC108427075)


Basic Information

Item Value
gene id alg10
gene name alg10,LOC108427075
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15539057 ~ 15544883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923726.2
AACAACCCTAAACCCGCCCTAGCCACAGACAAGTAGCAGGCAGTTTCAATAGCAGGGCTGCAGCGATACTGTAGTTAAAGTAGTGAAAGCtgatgttattgttgttattctgTTCCggttctaaaataaaataataacaataattaaaaaaaaaagaaaaaaaagatggaaaggtTTGAAGGCTACATCTTCCCTGTTGTTTGTAGCACAAATTTTTTAATATCATGTCTTCTTTTTTCTAAAATCACCCAGGAGCAAAGAGAGTCGTACATGGACGAGATCTTTCACGTTCCACAAGCTCAGAAATACTGTGAAGAGAAATTTAATGAgTGGGACCCTATGATCACCACGCTGCCTGGTCTGTACCTGCTGTCGGTCGGAGTGATTAAACCGGTCATGTGGTTGGTGGGTTGGACAGGAACAGCCTTGTGCTCCACTGCCATGCTGCGCTTTATCAACGTGCTTTTCAACTGTGGCAACCTCTACATCCTCTATCTCCTCATCTGCAAAATACACCCCAAGGACAAGtCCCGTGCGACTGGACGGCGTGTGCTCTCTGCCCTGGCTCTGTCCTCCTTCCCAGTGCTCTACTTCTTCACATTCCTCTACTACACAGACGCCGGCTCCACCTTCTTCATTCTCTTCGCCTACCTCATGTGTCTGTACAGGTGCCACAAAGCTTCAGCTCTGCTGGGCATCTGCGCCATCCTGTTCCGCCAGACCAACATCATCTGGGTGGCTTTCTGTGCCGGGACGGTCGTGGCTCAGAAAATGGACGAGGCCTGGAGGGTGGAACAGTCGAAAAAGAGGGATGAGAAATCGTCATCGCAGATCTCATTGCAGCTTAGCAGTGTGATGAGACTAGCGCACTTTTTACTGAAATACCTCACATCGCCAGTCAACATAAAGAGTGTGATTTTATCAACCTGGCCTTATGGTGTAGTCGCTTTGGGCTTTGTTGTCTTTGTGGTGTTGAATGATGGGATTGTGGTTGGGGACAGGACCAGTCATGAAGCCTGCCTGAACGCCCCtcagctgttttatttcttctctttcacGTTGATCTTCTCCCTTCCTATATCCCTTTGTTACCACAGGCTTGTTAGATTTGTGCAGTCTCTCCGGAGGCAtcctttcctctttctcctGATCACAGCTCTGTCTCTGTTCCTGGTCTGGAAGTTCACGTTTGTCCACAAGTACTTATTAGCGGACAACAGGCATTTTCCCTTCTACGTATGGAAGAGAATTTTCCAGAAGCATGAGCTGGTTCGCTTCCTCCTCGTTCCTGCATATATGTTTGCAGCATGGAACTTTATGGACACACTGAATTCCAAGTCGCTGTTTTGGATCTTGGCATTTTGCGTGTGTCTGGTGGCAGCTACGGTTCCGCAGAAGCTTCTTGAGTTCCGCTATTTTATCCTGCCATATCTGCTGTACCGCATCCATGTCCCTCTTTCATCCCTCCCCAGACTGCTGCTTGAATTTGCTCTGTATACAGCAGTCAATGCTGCGACAATCTACATCTTCATCCAGAAGACATTCCAGTGGCCTGATAGCCCTGCAGTGCAGAGATTCATGTGGTGACATGGGACCGCTATAATCTTTTCaccttttttattaaagaaaaggaaaaaacagtgtaaatgtGATTATAgttcttatttctttcttactGCTCTGACCACCTTCTTACTCTGCATTCATAtcagcaaacacaaacattattggggttatttttaatgtatatatgtgtctgCTGTGTCTTTTGAGTTGTCACTTGTTTACCGTGTGTATATATTAGTATCTCATTTGCCAAATTAAGGGTTCAAAATAGAGCTGGGCAATAATTGAAATTTCTGCAGATACCAACATTTGTAGAAAATTTGGCATTGTTAATAGCAGTGCAGCTGCCATGAAACTAACATTTACCTCTCAAGCACAATGTCAGTGTCTTGTTGTCTAACTCTTGGTGTGGTAGCCAATCAGAGCAAGCCTGTGGGCAGAAACCAATGAAAATAGAAACGAGACAGAGCTTGTGGACTGAACCATCTGTATATTATTTACTATGTTTAACTTATGTTGAACATGACTAAATATTCTCTTGGATAAATCTTTGAAAAAattttttctacataattttaattttgatcaAATATTTATCGCCCAGCTCTAGTTGACTGTCAtatctttaaaataatgatgCTCCCACGTTTGTTCCAAATGACGTTCACATAGTTCAGTCCCATTGCATCAGGTTGCTGTTGTCTCCAAATTTAGATCAAACTCAAGGGTTGAGCCACGTGTCTGTACATAGCAATCACATTAGTCTTAGTTCCTgtatgttttcatgtgaattaCCTTTATTTATGAAAGATAATTGGTTTCTGTTATTGCTCTGCTGGAGTTTAAATCCAGTGTTTGgatgcaataaaaatactgattaCTTA

Function

symbol description
alg10 Predicted to enable dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in long QT syndrome 2. Orthologous to several human genes including ALG10B (ALG10 alpha-1,2-glucosyltransferase B).

NR:

description
putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923726.2 True 2450 mRNA 0.43 3 15539057 15544883

Neighbor

gene id symbol gene type direction distance location
LOC113532250 NA coding downstream 202124 15325373 ~ 15336933 (-)
LOC113532267 muc19,LOC108280038 coding downstream 275664 15236542 ~ 15263393 (-)
LOC113532243 LOC108279995 coding downstream 302747 15213936 ~ 15236310 (-)
LOC113532053 LOC108279522 coding downstream 400580 15122734 ~ 15138477 (-)
LOC113531721 iapp coding downstream 420496 15116227 ~ 15118561 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding upstream 9390 15554273 ~ 15563716 (-)
cerk cerk coding upstream 211423 15756306 ~ 15778944 (-)
brd1a brd1 coding upstream 824786 16369669 ~ 16389481 (-)
LOC113531729 pim3 coding upstream 904903 16449786 ~ 16452939 (-)
il17rel il17rel coding upstream 1023812 16568695 ~ 16581436 (-)
G283081 NA non-coding downstream 17367 15517224 ~ 15521690 (-)
G283022 NA non-coding downstream 148956 15387948 ~ 15390101 (-)
G282999 NA non-coding downstream 185616 15350706 ~ 15353441 (-)
G282950 NA non-coding downstream 267857 15270994 ~ 15271200 (-)
LOC113532334 NA non-coding downstream 325802 15209348 ~ 15213255 (-)
G283218 NA non-coding upstream 209434 15754317 ~ 15754605 (-)
G283307 NA non-coding upstream 497479 16042362 ~ 16042579 (-)
LOC117599449 NA non-coding upstream 533885 16078768 ~ 16082121 (-)
G283503 NA non-coding upstream 694632 16239515 ~ 16239901 (-)
LOC113532372 NA non-coding upstream 749997 16294880 ~ 16296190 (-)
LOC113531972 muc19,LOC108280038 other downstream 354982 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 3786144 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 3878730 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 3951033 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 4279645 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 856038 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 1293652 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 1413629 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 2433880 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 2482851 18027734 ~ 18067585 (-)

Expression


Co-expression Network