mapre3b (mapre3,mapre3b,LOC108425644,LOC107594695)


Basic Information

Item Value
gene id mapre3b
gene name mapre3,mapre3b,LOC108425644,LOC107594695
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11067737 ~ 11076762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923844.2
AAATCTGTTCGCCGTGATTCGTGAGTCGTGTTGCCACAGACAACCAGCTAGCAACAGCGCATGCGCGGACAGAACACGCATCAACTACGCACCCAGGGACGCATAACGCAACAAACAAACGCCTCTTTTGAGGATTCTGGGGAATGGCGGTGAATGTGTACTCCACATCTATGACCGTTGAGAACCTGAGCAGACATGACATGCTCGCTTGGGTCAACGATTCTCTGCAGCTCAGCTACACTAAAATAGAGCAGCTCTGCTCAGGTGCAGCATATTGCCAGTTCATGGACATGCTGTTCCCCGGGTGTATTCTTCTGAAGAAAGTGAAGTTCCAGGCCAAACTGGAGCATGAGTACATCCACAACTTCAAAGTGCTCCAAGCAGCCTTCAAGAGAATGAATGTAGACAAGATCATCCCAGTTGAAAAGCTGGTGAAAGGAAGGTTCCAGGATAACTTCGAGTTTGTTCAGTGGTTTAAGAAATTCTTCGACGCAAACTACGACGGGAAAGAGTACGACCCTCAAGCAGCACGACAAGGCCAGGACGTCACGCCTACACCCAACCCAGGCCCCCAGAGGACATCACCTACAGtacccaaaaacatgccaacaCCCCAGCGGCCGATCAGCTCTGCCCCAACAAATGTAAAACGAAGCGCACCTGTGTTACGGAACGGAGGAAGCGAGGCAGAACTTATGGAACTCAACCAGCAGCTGATGGACCTGAAGGTGACAGTAGATGGcctggagaaggagagagacttTTACTTTGGCAAACTGCGTGATATCGAGCTCATCTGCCAGGAGCATGAGAGTGAAAACAACCCAGTTCTTGCAAAGATTGTCGACATCCTCTATGCTACTGAGGATGGTTTTGCTCCTCCAGAGGATGATAAAATTGATGAACACCCACAAGACCAGGACGAGTACTAAACTCTACAAACGTATGCATCCGTACATCCTTTAACTTTGTTCTCCCACTCCACTTCTTATCCGTCTGTTCCTTCTCTGCCCTCATTCATTCTTCACTCTGACCTTCATTTTATCTTTTGATGAgcttgatttctttcttttttatttactcactcTGAGTACTACTCTTTTTGGCCCGTTCCTTTCTAAAGAACCAGCAGCTGATTTACATCACCGCCTTTAACATGTGGTTGTGGTGTATTGATGGAGTGGCTAACATAGTTTTTGCGAATGTCATTGGTTTTAAATACCATTTGTTCTTAATGGTAGAGTTAAATTTTCATCCTCGCTATACCATTGGCCATGCATTTACTTTTGAGTCTAAAATGATATTCACTAATGGTAACACTAATGCCATGACTTATTAACATGTACaccaaaacatttattataacatGTCTGAAACCTTTAAGTCAGAATGCTAGGAGAACATAAGAAtttcttatttgcatattgtgTACTAATGCAAACAGTTTTAATAGACAGCAGAATATAAACCAAACCACAGCTTCATCAGACTATGAAATAGATGTATAAAGTgcaagcacatgcacacacacaacataaccTTCCTCTGCACTACTACTGTATCTGGCTGTTGTAAAGCATTTCATAAATATCtgctgagatttttttaaaagcctgCTTCATCTGATAGCAAAATGTCCACATGGTTTGCATTTTGCTTTTGTGATTTAAATTCTTTTGGCTTTTTGGGAAGGTGTTTCTACTATATAGGAACTAAtttaagtgtttttaaaaaagaataactaGTGATCAGAGAGACCCTGTGAATTTTACAGTTGTGTGAACAAACCTGGATTCCAGCTGCATTTCTTCTCATGCCTTCCCGAAAGAAATGGGTTTAGCATTGCAACATGTGAGCGCTCACACTACTGAGTGCATATAGGATTAAAACAGGATGCGGATCAATCCAAATAAATGTATCTTGGTAGCCTGGAAAAATCAAAGCTATGTTCTCTCTGATTATTGAGATAGAATTTAGTGTGTGCACTTTGCAGCTGTAAGAATTtgagatatatttatttattaaagatgacTATAAAATGAGATGCTAAAATAGTTCATAACAACTtgagtttcatttttaaaacaattaatattAGAGTAAAAACATGCTGAGTTTTTAGCTACTatgtcagtgttgtgttttatttttcatgtttcacaTGCATTAATGCCATAAAGGTTGATTTTGATTGACAGGATCTGTCTGTAACTCATTAATTTTGTCCCTCGTTTATTTGGAGTTTTActatgtaaaataaagtgtattCTGGCAATGA

Function

symbol description
mapre3b Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).
mapre3 Enables identical protein binding activity; protein C-terminus binding activity; and protein kinase binding activity. Involved in positive regulation of protein kinase activity and regulation of microtubule polymerization. Located in mitotic spindle astral microtubule end and perinuclear region of cytoplasm. Colocalizes with cytoplasmic microtubule.

NR:

description
PREDICTED: microtubule-associated protein RP/EB family member 3-like isoform X1

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923844.2 True 2278 mRNA 0.40 7 11067737 11076762

Neighbor

gene id symbol gene type direction distance location
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 1790 11053196 ~ 11065947 (-)
agbl5 agbl5 coding downstream 17131 11035084 ~ 11050606 (-)
LOC113531821 gen1 coding downstream 39332 11012219 ~ 11028405 (-)
msgn1 msgn1 coding downstream 58105 11008342 ~ 11009632 (-)
LOC113532419 lgr5 coding downstream 93041 10941118 ~ 10974696 (-)
rsph9 rsph9 coding upstream 252266 11329028 ~ 11344755 (-)
tmem63a tmem63b coding upstream 279298 11356060 ~ 11380183 (-)
faxca LOC108279701,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC106571486,LOC106607948 coding upstream 349296 11426058 ~ 11441607 (-)
ccnc ccnc,LOC107579661 coding upstream 367348 11444110 ~ 11454450 (-)
pgm3 pgm3,LOC107579473,LOC107656266 coding upstream 385125 11461887 ~ 11469636 (-)
G280652 NA non-coding downstream 136757 10930738 ~ 10930980 (-)
G280640 NA non-coding downstream 159107 10906173 ~ 10908630 (-)
G280615 NA non-coding downstream 283444 10783361 ~ 10784293 (-)
G280527 NA non-coding downstream 289840 10776763 ~ 10777897 (-)
G280360 NA non-coding downstream 597362 10468686 ~ 10470375 (-)
G280812 NA non-coding upstream 93124 11169886 ~ 11172446 (-)
G280817 NA non-coding upstream 103169 11179931 ~ 11182051 (-)
G280818 NA non-coding upstream 106304 11183066 ~ 11184143 (-)
G280841 NA non-coding upstream 183029 11259791 ~ 11259991 (-)
G281021 NA non-coding upstream 282600 11359362 ~ 11359636 (-)
si:ch211-51e12.7 LOC108280090 other downstream 60594 10995105 ~ 11007143 (-)
LOC113532274 NA other downstream 771539 10255972 ~ 10296198 (-)
cracr2ab LOC108280118 other downstream 1175351 9878481 ~ 9892386 (-)
G279415 NA other downstream 1859174 9207351 ~ 9208563 (-)
G278912 NA other downstream 2848057 8218561 ~ 8219680 (-)
sobpb LOC108279441 other upstream 2406 11079168 ~ 11094176 (-)
vegfab vegfa,LOC108435123 other upstream 162173 11238935 ~ 11259412 (-)
G281074 rad51ap1 other upstream 509542 11586304 ~ 11588024 (-)
G281092 mansc1 other upstream 581128 11657890 ~ 11660327 (-)
dusp16 dusp16 other upstream 644301 11721063 ~ 11752913 (-)

Expression


Co-expression Network