LOC117599449


Basic Information

Item Value
gene id LOC117599449
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16078768 ~ 16082121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579867.1
GCGCAGCCCAGAAGCTCGCGCTCATTCTCGGCCACGCGACCGCGTCCTCGCGCTCAGTCCGTCGGCGCGCCGCAGCCATGATCAACCAGAAGCCGACTTTTCTTCAGCAAAACACGAGAAGaaaaacagcagtgcAGTATCAGGAGAATGCTGCAAGACTTCGAGGCCTCAAGAAAGTGGCTGAACATGATGCTGCGTTTCAGCACCACAGCAAGTGGACAGCGCCAAAgaccattcacacacacgtttgttcatttttactcAACTGCTGTTGaacacatttacagtttttgcTGACTTTTCAAATGTACATTATTTCCCACACAGTATAATCACCCTTATGTTCTCAGTCATTTTGTTACATAATAGAAAGTCTAGAGTCTGAACAATGCCAGAAAGATTTTATAAGGATTAACGATACAAGCctgttttaaaatagaaaatagtgCACAGTGAGTTAGAGAGCTCGGCTATGTGCCAGGCACATTACTGGCACCTTGCACTAacagcacacactcactgcattAATCCTGTCCAGGAGCCCTTCATATGTTTGCATTGCATCAATAACAAATCCCCAACACTGGGCATGAGAGAGTCTCAAATccaatgctgtgtgtgtgtgtgtgtgtttgcggtTATTGAAATTTGCCATTGACAGACCTCTAACTTGGCAGACTTGGCAACCATTACTGTGTCGCTGTAGAATTgacttaaatataatttattccAAAACAAGTGCCTGAtcattttatgtgaaataatatAATGTGCTTCCCCAAACATAACTAGACTTTTATTCATGATGATTGATTGTTGCTGGAATGCTTTTTGCATGCAAGCCTTATTGAGGCATTGGTATTAATAGATTTTGGTATTTTCagatgagctttttttttgctgagtaCGGTGACAGCACAAATGTTTTGGTCCTGGTGTATAATAGAGTCCCGCGGGATCTGTGACTCTGTTGATAATGCTCAGCATGGCATACCAGCGAAGCAGGTCTtctttcatataaataaaatagagttAGAATAAAGATTACACACCAGCTGGATGCCAGGCAGGGATTTAAGGGCTTGGTAGTGGTGGTAGCTCAGTAGTTAAGGCTCTCAACTTGTAACTGGAtggtcgtgagttcaaatctgaGCAATTTTGGGTCCTTGAACAAGGCTGTTAATGCTGAACTGCTTAGACCTTTAGATAAAAGCATCTtccaaataataaatgtaagtgTCTAGAGACTCCACACCACCAAGCTTTGTCCAACTTGCTGGAATTCACAACTGGCTAGCGTTCAGgcattataaataatgtccCAAATACTAGACAGATTATTGTTACTTTCTAATGTTTATTGCATCATCTTGATAGCTCAGAAACCAGCAGTctcttcccataatgcacagCAAACCTACATCACATTTACCACATGAGCTCTGAGCAGCCAGATTGTTACAAATGTACCAATCAGATGATTGTGTAATGCAATAAAGCATAAAGTTAATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579867.1 True 1515 lncRNA 0.41 2 16078768 16082121

Neighbor

gene id symbol gene type direction distance location
cerk cerk coding downstream 299824 15756306 ~ 15778944 (-)
srr LOC108279919,LOC108427077,LOC107726835,LOC105418280 coding downstream 515052 15554273 ~ 15563716 (-)
alg10 alg10,LOC108427075 coding downstream 533885 15539057 ~ 15544883 (-)
LOC113532250 NA coding downstream 741835 15325373 ~ 15336933 (-)
LOC113532267 muc19,LOC108280038 coding downstream 815375 15236542 ~ 15263393 (-)
brd1a brd1 coding upstream 287548 16369669 ~ 16389481 (-)
LOC113531729 pim3 coding upstream 367665 16449786 ~ 16452939 (-)
il17rel il17rel coding upstream 486574 16568695 ~ 16581436 (-)
LOC113531895 usp15 coding upstream 539982 16622103 ~ 16647682 (-)
LOC113532402 LOC108279763,LOC108425342 coding upstream 566951 16649072 ~ 16662362 (-)
G283307 NA non-coding downstream 36189 16042362 ~ 16042579 (-)
G283218 NA non-coding downstream 324163 15754317 ~ 15754605 (-)
G283081 NA non-coding downstream 557078 15517224 ~ 15521690 (-)
G283022 NA non-coding downstream 688667 15387948 ~ 15390101 (-)
G282999 NA non-coding downstream 725327 15350706 ~ 15353441 (-)
G283503 NA non-coding upstream 157394 16239515 ~ 16239901 (-)
LOC113532372 NA non-coding upstream 212759 16294880 ~ 16296190 (-)
G283546 NA non-coding upstream 366318 16448439 ~ 16449766 (-)
LOC117599589 NA non-coding upstream 536591 16618712 ~ 16619718 (-)
G284003 NA non-coding upstream 959506 17041627 ~ 17043280 (-)
LOC113531972 muc19,LOC108280038 other downstream 894693 15139925 ~ 15184075 (-)
dusp16 dusp16 other downstream 4325855 11721063 ~ 11752913 (-)
G281092 mansc1 other downstream 4418441 11657890 ~ 11660327 (-)
G281074 rad51ap1 other downstream 4490744 11586304 ~ 11588024 (-)
vegfab vegfa,LOC108435123 other downstream 4819356 11238935 ~ 11259412 (-)
alg12 alg12 other upstream 318800 16400921 ~ 16406863 (-)
LOC113532230 LOC108280029,LOC107562148,LOC107687569,LOC107741714,LOC105912408 other upstream 756414 16838535 ~ 16853395 (-)
phf21b phf21b other upstream 876391 16958512 ~ 17027865 (-)
LOC113532261 smkr1 other upstream 1896642 17978763 ~ 17988280 (-)
ahcyl2b ahcyl2,LOC106609228 other upstream 1945613 18027734 ~ 18067585 (-)

Expression


Co-expression Network