Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113540012 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23513456 ~ 23514039 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC113540012 | True | 443 | V_segment | 0.42 | 2 | 23513456 | 23514039 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540113 | LOC108267226 | coding | downstream | 8275 | 23466417 ~ 23505181 (-) |
| LOC113540011 | NA | coding | downstream | 49731 | 23446805 ~ 23463725 (-) |
| LOC117597115 | NA | coding | downstream | 70713 | 23430300 ~ 23442743 (-) |
| LOC113540008 | NA | coding | downstream | 94566 | 23409414 ~ 23418890 (-) |
| nol7 | NA | coding | downstream | 130568 | 23376456 ~ 23382888 (-) |
| LOC113540016 | NA | coding | upstream | 23389 | 23537428 ~ 23544732 (-) |
| amph | amph | coding | upstream | 33131 | 23547170 ~ 23583496 (-) |
| fam49ba | LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 | coding | upstream | 244345 | 23758384 ~ 23782113 (-) |
| asap1a | LOC108267580,LOC108437251 | coding | upstream | 270059 | 23784098 ~ 23843304 (-) |
| ubtfl | ubtfl,LOC108267581,LOC107718032 | coding | upstream | 331005 | 23845044 ~ 23858386 (-) |
| LOC113540115 | NA | non-coding | downstream | 59235 | 23453233 ~ 23454221 (-) |
| G69551 | NA | non-coding | downstream | 115493 | 23396664 ~ 23397963 (-) |
| G69503 | NA | non-coding | downstream | 234674 | 23278575 ~ 23278782 (-) |
| LOC117597081 | NA | non-coding | downstream | 239842 | 23272162 ~ 23273614 (-) |
| G69320 | NA | non-coding | downstream | 458073 | 23054514 ~ 23055383 (-) |
| G69649 | NA | non-coding | upstream | 80292 | 23594331 ~ 23594544 (-) |
| G69691 | NA | non-coding | upstream | 137012 | 23651051 ~ 23651866 (-) |
| G69916 | NA | non-coding | upstream | 408067 | 23922106 ~ 23922538 (-) |
| LOC117597086 | NA | non-coding | upstream | 417294 | 23931333 ~ 23932235 (-) |
| G70025 | NA | non-coding | upstream | 624254 | 24138293 ~ 24138492 (-) |
| LOC117597075 | LOC108267226,LOC108267227 | other | downstream | 16435 | 23495957 ~ 23497021 (-) |
| LOC117597074 | NA | other | downstream | 17559 | 23495035 ~ 23495897 (-) |
| G69592 | LOC108267226,LOC108267227 | other | downstream | 19537 | 23493379 ~ 23493919 (-) |
| LOC117597073 | LOC108267227,LOC108267226 | other | downstream | 29606 | 23479965 ~ 23483850 (-) |
| retreg1 | fam134b | other | downstream | 166883 | 23331016 ~ 23346573 (-) |
| LOC117597116 | NA | other | upstream | 335 | 23514374 ~ 23514935 (-) |
| LOC113540114 | LOC108267227 | other | upstream | 1660 | 23515699 ~ 23516359 (-) |
| LOC113540013 | NA | other | upstream | 2891 | 23516930 ~ 23517670 (-) |
| LOC117597117 | NA | other | upstream | 17199 | 23531238 ~ 23532016 (-) |
| G70255 | rnf220 | other | upstream | 790335 | 24304374 ~ 24304926 (-) |
