LOC117597073 (LOC108267227,LOC108267226)


Basic Information

Item Value
gene id LOC117597073
gene name LOC108267227,LOC108267226
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23479965 ~ 23483850 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597073
CACAGGTGCAAAGAGTGCTGAACTGAGAGCATACTTTATTTTACTAccaaatcaaaatgtttataGCCATATATGCTCTTATCTTCTCACTGGTCACAGAAGCTGTTCTGGGAGTAAAACTGGAGCAAAAAGATCTCTCCATGACAAGAGAGGAGGGCAAAACTATACCTATCAGTTGCAAAGTGACCGAATTATCCAGTGATTATGTCCACTGGTACCAAAAGAAAGAAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACAAGAGAGGAGGGCAAAACTATACCTATCAGTTGCAAAGTGACCGAATTATCCACTGATTATGTCCACTGGTACCAAAAGAAAGAAGGTGAAGCCCTCACAAGGATCTTATATGTCAAAAAAGGAAGCACACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGAGGATACAGTCTGATAATTATGATCTGAAGATAGCACGCCTGAAGAAAAGTCACTCAGCAGTTTATTATTGTGCCAGCTGGGCAGGCtaccacagtgacaggaaatacTCACAGTGTGTACAAAAACCCTGATGGTACACAACCACAACGGAAACTGTACA
>TU82584
GGTGCAATAAAGAGTGCTGAACTGagagcattttttattttactaccaaatcaaaatgtttataGCCATATATACTGTTCTCTTCTCTTTGGTCACAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACAAGAGAGGAGGGCAAAACTATACCTATCAGTTGCAAAGTGACCGAATTATCCACTGATTATGTCCACTGGTACCAAAAGAAAGAAGGTGAAGCCCTCACAAGGATCTTATATGTCAAAAAAGGAAGCACACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGAGGATACAGTCTGATAATTATGATCTGAAGATAGCACGCCTGAAGAAAAGTCACTCAGCAGTTTATTATTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597073 True 610 V_segment 0.42 3 23479965 23483850
TU82584 False 390 TUCP 0.39 2 23480052 23480566

Neighbor

gene id symbol gene type direction distance location
LOC113540011 NA coding downstream 16240 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 37222 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 61075 23409414 ~ 23418890 (-)
nol7 NA coding downstream 97077 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 157354 23318535 ~ 23322611 (-)
LOC113540016 NA coding upstream 53578 23537428 ~ 23544732 (-)
amph amph coding upstream 63320 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 274534 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 300248 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 361194 23845044 ~ 23858386 (-)
LOC113540115 NA non-coding downstream 25744 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 82002 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 201183 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 206351 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 424582 23054514 ~ 23055383 (-)
G69649 NA non-coding upstream 110481 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 167201 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 438256 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 447483 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 654443 24138293 ~ 24138492 (-)
retreg1 fam134b other downstream 133392 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 173031 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 843877 22629615 ~ 22636088 (-)
G68760 NA other downstream 1544796 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 2108955 21354619 ~ 21371010 (-)
G69592 LOC108267226,LOC108267227 other upstream 9529 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 11185 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 12107 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 29606 23513456 ~ 23514039 (-)
LOC117597116 NA other upstream 30524 23514374 ~ 23514935 (-)

Expression


Co-expression Network