LOC117597074


Basic Information

Item Value
gene id LOC117597074
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23495035 ~ 23495897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597074
ttttttttaataataataagaaaattacTGATACACCAAATCTGGGCTAATGTTGTCTGACAAGGTGGCCAATCCCCACcccaggaaatgacatcattacttTATAAAGGAAAGACTCGTGTTCTATactacattaatgcaaaaactCATCTGatacaactttattttatatccaAATCAACATGTTTATAGGCATATTTGCTGTTCTCTTCTCTTTGGTCACAGAAGCTGTTCTGGGACTGAAACTTGTACAAAAAGATCTCTCCATGACAAAAGAGGAGCGCAAAAGAGTGTCTATCAGCTGCAAAGTGACCGACTTATCCAGTAGCAACTATGTCCACTGGTACCAAAAGAAAGACAATGAAGCTCTCACAAGGATCCTATATGTCAAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGTGGCCACAGTCTGCTAATTATGATCTGAAGATAGCAAACCTGAAGAAAAGTCACTCTGCAGTTTATTACTGTGCCAGCTGGgagtacagcagtgacacagtGACAGTAAATATTCAAAGTGTGTACAAAAACCCTAATGGTTCACAACTACAACAGGAAATGATATGAAGTGTTAAAATGTGAATACACACAAGTCAAACTCTACAGGAGTCTCAAAAATATTCCTGGGAATATACTGGGAATGAAATGTAAGGTGTGGCTATATTT

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05170 Human immunodeficiency virus 1 infection
ko05168 Herpes simplex virus 1 infection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597074 True 713 V_segment 0.38 2 23495035 23495897

Neighbor

gene id symbol gene type direction distance location
LOC113540011 NA coding downstream 31310 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 52292 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 76145 23409414 ~ 23418890 (-)
nol7 NA coding downstream 112147 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 172424 23318535 ~ 23322611 (-)
LOC113540016 NA coding upstream 41531 23537428 ~ 23544732 (-)
amph amph coding upstream 51273 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 262487 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 288201 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 349147 23845044 ~ 23858386 (-)
LOC113540115 NA non-coding downstream 40814 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 97072 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 216253 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 221421 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 439652 23054514 ~ 23055383 (-)
G69649 NA non-coding upstream 98434 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 155154 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 426209 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 435436 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 642396 24138293 ~ 24138492 (-)
G69592 LOC108267226,LOC108267227 other downstream 1116 23493379 ~ 23493919 (-)
LOC117597073 LOC108267227,LOC108267226 other downstream 11185 23479965 ~ 23483850 (-)
retreg1 fam134b other downstream 148462 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 188101 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 858947 22629615 ~ 22636088 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 60 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 17559 23513456 ~ 23514039 (-)
LOC117597116 NA other upstream 18477 23514374 ~ 23514935 (-)
LOC113540114 LOC108267227 other upstream 19802 23515699 ~ 23516359 (-)
LOC113540013 NA other upstream 21033 23516930 ~ 23517670 (-)

Expression


Co-expression Network