LOC117597075 (LOC108267226,LOC108267227)


Basic Information

Item Value
gene id LOC117597075
gene name LOC108267226,LOC108267227
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23495957 ~ 23497021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597075
TGCAAAAACAGGTGCAATAAAGAGTTCTGAACTGAGAGCATACTTTATTTTACAAccaaatcaaaatgtttataGCCATATATACTGTTCTCTTCTCTTTGGCCACAGaagctGTTCTGGGAGTGACACTGGAGCAAAAAGATCTCTCCATAACAAAAGAGGAGACCAAAAGAGTGTCTATCAGCTGCAGCGTGACCGGATTATCCACACAGTATGTCCACTGGTACCAAAAGAAAGACAATGAAGCTCTCACAAGGATCCTATATGTTGAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGAAGCAAAGGACTTCGATGTGAGGCCACAGTCTGCTAATTATGATCTGAAGATAGCAAACCTGAAGAAAAGTCACTCTGCAGTTTATTACTGTGCCAGCTGGgagtacagcagtgacacagtGACAGTAAATATTCAAAGTGTGTACAAAAACCCTAATGGTTCACAACTACAACAGGAAATGATATGAAGTGTTAAAATGTGAATACACACATGTCAAACTCTACAGGAGTCTCAAAAATATTCCTGGGAATATACTGGGAATGAAATGTAAGGTGTGGCTATATTTCTGCAATATTTCAGAGGGTCTCACCTACTAGTGCACACTGACAATGCTATGATGATGTgttatagtaattttttttaagaaatagaaaataacaaatGCACCAAGTCTGGGTTAATGCTGGCTGACAAGGTGGCCAATCCCCACaccaggaaatgacatcattactttataaatgaaaaactaaTGTTCTAAACTTGAATTAATACAGGTGCAAAAAAGAGTGCTGAACTGcagcttattttatttcacatgcaATTCAAAATGTTTATAGCCATATATGCTGTTCTCTTCACTTTGGCCATAGGTAAGTATCAGATCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267226

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597075 True 912 V_segment 0.38 2 23495957 23497021

Neighbor

gene id symbol gene type direction distance location
LOC113540011 NA coding downstream 32232 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 53214 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 77067 23409414 ~ 23418890 (-)
nol7 NA coding downstream 113069 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 173346 23318535 ~ 23322611 (-)
LOC113540016 NA coding upstream 40407 23537428 ~ 23544732 (-)
amph amph coding upstream 50149 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 261363 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 287077 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 348023 23845044 ~ 23858386 (-)
LOC113540115 NA non-coding downstream 41736 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 97994 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 217175 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 222343 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 440574 23054514 ~ 23055383 (-)
G69649 NA non-coding upstream 97310 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 154030 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 425085 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 434312 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 641272 24138293 ~ 24138492 (-)
LOC117597074 NA other downstream 60 23495035 ~ 23495897 (-)
G69592 LOC108267226,LOC108267227 other downstream 2038 23493379 ~ 23493919 (-)
LOC117597073 LOC108267227,LOC108267226 other downstream 12107 23479965 ~ 23483850 (-)
retreg1 fam134b other downstream 149384 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 189023 23292048 ~ 23306934 (-)
LOC113540012 NA other upstream 16435 23513456 ~ 23514039 (-)
LOC117597116 NA other upstream 17353 23514374 ~ 23514935 (-)
LOC113540114 LOC108267227 other upstream 18678 23515699 ~ 23516359 (-)
LOC113540013 NA other upstream 19909 23516930 ~ 23517670 (-)
LOC117597117 NA other upstream 34217 23531238 ~ 23532016 (-)

Expression


Co-expression Network