G58585


Basic Information

Item Value
gene id G58585
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2268192 ~ 2274161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69364
TAACCTTTCTGCTTTCAGATGTATTTATTGTCGTCGTAGATCTGCTGAATGAAAACAAACTCAGAATATAAGTTTTAATTCCATAATTTATTCAAGACAGCAAATGCACTTTCATCCAAGTACATGTGCATAGGCTTTATCTACATccacatttcttcttttttttcgtCTTATTGCTGAAAACAAGACCATCCttttagaaatgtataaaaggAAATACACTTGTTGGTGAAAAATAATTCTATCTGCCGTTGTGCTGTGAGTTATGTCATGTGTGATGGGTTTCGCTGTTAGTAGGACGATTTCCTCGAGAAGTTCGTTAACAGTTACACCTGCTCCAGTAACTGGAGGAAAAAGTAGTTTCTTTACATACATGTGGAATTAAACACTTTCCATTTAAACaggattttcatccaaacaCACCAAGACTGCATTCCAGTACTGTTTTTAATGCGCACTCGTCCCACGTGATCGAAGCCTTGCCAACTTTCTGCTACTTTAGCTACTCAAGTAAAGTTTTTCAGATGATCGATAGATGATGGATCGACTCAAAAATCATCATAGATGAACGATCATTTGAAGTTTCTTTTACATTAATTTTAGGTGTTTATATCTGTTCTACTCTAACTAGTACATAATATAACACTGCTACTTTACTCGGATAGCCACTTACTTAGcatggttgctaagcaacaagCTGATAGAACTGTACACAGACTGTGTTTTGGTAAAACAGTGCTGAAAAGCAGagattaatacaaaaaaaagtacagcaaGAATGTCACATAGACCTTCACATCCTCAACTACGTCACAGCAACTCCAACTGTGCAAGATATAAAACgtctttacaattttttttttcttttcaaagctGCTAATTGGTTAGAATCATACTAGCTGGAAAAATGACACCATCTTGCTTTCACTATTTTCACGTTAACACAAGCGTTTGTGCAGTTTGGTGTAAAATATAAGCAGATCTCTTCAATACGGAGCTGCTGAGCGTGATAACAGGCTTTAactccatttttcttttattttcattaatgaattctgaaatactgaaactgGTCAAATCTGCTTAAAACTATTAGAGGTAGGAGAAATCGACCAATGAAAGCACATTCACGGTGAATTATTCATGTCTTCTACTGTACattttgcttttccttttttttcttttcttttctttttttttttttaaagagagccAACATCTGCTGGAATAAACGACGGGGATAAGTGCATgcagaacaaacagaaacaacCATTTTGCTACAATCTGtaatttactcttttttttttttttttttaacaaatatcaATACCATGTAAAGCTAAACTACtgacaaatgaaaaagaatgaatttaaattGTGAAACCTTGCATCCCTGAGGGCTAAGATGCTACAgacagtgagaggagagagagggggaaagaaacagataaaaaatacgctttaaaaaaggaagaggctgaaaaaaaatgtaaataactgaaaaaataaatctggaGAGAAACGGGGGAAATTGAGAAGAAGTGTGATTAGAAATGAAGAACTGAGGAagaaattacactgtaaaaaaaacaacttgaaaAAGGTTTAAATGAGTGGTTTTGTTGTGATGGTTGAACAAAAATCCATGAAAAAGTCAGTACAACTGTTTAAAACACTTATTCAACCTAAAGATGAGTTTTGTGAACAACGCTTTGCAATCTTATTACCTGGAGTCAAGTCATCTATCTGATTTATCCCACAGGAGGAAGCAAATCCCAGTTTTAGAGTCAAATCCAACCATTTGTTTACTTTgagacaataaagaaaaacagttgtttagtgatttttaaaagaacTTAACAGACGTGCCTACTGTGCATACAGAACTGTACAACTGTACAGAAGGGAATAAAAACGAAGGCAGGAAGAAATGAGGAAGTGATGGAGAGGATGTTGGTAATGTGGTTAAACATGGAGAAGAAATAGAGAAGAAATGGGTAAAATTTGCAGAAGGGTGGGAGAAGATGGAGATGAAATAGTAAAGAAAATGGAGAAGAGATTGAGAAAAGATGCTAAAAagcaatgaagaaaaaaatatataaaaaaggagGACAAATATGGAAGGAGTTGAATTAATACTAAGAAGCAACTGATAAGAAACGATGGTTTAATATGGAATAAAGAGGGAAGAAGATTGAGAAGATGGGAAGTAAAGAAAGGAATGAATACAGAGAGAagctatttataaaaatgatctgTTATATATGGTATATTTTCACTTAGTGAAACAAATGAGgatgaatagagagagagagagtgagagagagagaggatgacaCTCATCTTTTAGTGTACTGATCTGTGTTCATTTATCTGAAAGAACGGATGGAGAtcctctgagagagagaagtgaagaaACATCCTGACTGCAGGTTGGTGGATGGTGGATGGGAGCTGCTCGCGATACAAAGCGAGAAAGCGAGAAGCGCAGGCAGCAGAACAAACCACTCGTTTAATGAGCAAGGAACTGATCCACACTGCCAAAGTCCTCAAAGATCGAATAAGCAGCGAGGCTCTGAAGACAGCTGGGAATATTCATCTCACAGGAGAGACGGCCAGGAACGAGCTTCAACAAGACTTAATCCCGCTTTCACACTTAACTACTGAGTGTCTCTGGAGCTGATTTCAGATCAGTGTCTCTCACTGAAGagattattattacattaaatgtaatgaaaacacacacattgtgttcACATTACAGTGATccaaacctgtttttttttactaaatgtGAACAGAGACACACTGTGTGTTCGAGTGCTCCTGGGAAGTTCGTATTTACGAGTTGGGAAGTTGTAATTATGACGTCAGGTGCGTTCAGGTCACTTTAGTCGGAGCAAGATGGCGGTGAACCTTCTCTTAATTAACTCCAAAAAATACAGCAATGTTTTTAACTCTacttctagaaaatgaagaagaaacaaAGCGCATGAGGTGTGTTTTGCTTCGTTATGTTTCTAATCAATTTACCAAGCCACTGTAGACTCTATCGTTacatattatactgtaattGTACAACGCTATCGTATTTTGTGCAGGAaattagcttgttttattgtaaataaaaaagcctgATAAAGATAAATTCACTGATAAATACTCAGCTAATTAACCATCAGCTACAGACGCTGTATCCACTGATTCCACCATGTTCTCTTCCTGACACGCCCCCTTCTCAGAAACTCAGCGCTGAAAGAAAATCCCGAGTTTCCCACtcgtaattacgactttgtggtggtgttcatgttcatgtgtgttcaCCTCGTAATTCCCATCTTTCTGACATGACTTGAACGCACCGACAGATCTTAATATTTtggaatgaaaaagaaaatcagatcTACGCTGCTTTCTTAAGCACTACTAGATCACATATGTTTTACTTCAGGGACAAAATGcaatgaataaattaatcatttatgtCAAAgcataaaatataatgaaagtTCATGATACGGTACGTTCACATTTGCAGTGACTAAAATCAatttaaaagtcatattttaaaattaatcgAAGCTGCTTTCATATGCGCTCTTCCATGTACGTCCATGAGAGCGTTATGAGAAAACGCAGATCAAAAGTCATGATTTTTTAACACCATGCCGATAACTAGCTAGCAATCAAGGTAATGTTAACTAGCAAGGCAGCTAATTAGTTACCTATTTATGTCCTATGACAAACTTTCAGTGcaatgctagccagctagctatacTTAATACCATATTGGTATTAGTAACACCTTATGAAGCTGTTAGAGAGATACTTACGTTAAGCTAACATACTCAACAATAAGTAATGTAATCCCAGTGTAACACTCGCTAGCTTATTTAAGAGAAAGCCGTTAAAGGCTAGCTATTTTTCGGCAAAAAAAGTTATCAATTTATAAATCTTCATTTCATACTATTAAAACAGCCGTAGAATACGAACGCTCGTGCTGCCAGTTTATTCGTATTATCACTACTGCGTGAGGGATTGtctaaaaactgcatttctcTTGTTCatgatgcgtgtgtgtgaatcGTGTGTGTTATTAATCCGTGTGCATGCGGCTCAGTTTCAGCCAAGCGTTCTCACGAATGTCATCTACATCTATCATGGGAATGCAGCCAAAACGGTTCCTCTCGACCCAAATCACGAGAACGCTGAATATCTAAACGAATAAATACTCAAGTGTTGTGAAGAagggatggacggatggatggatggactgacagatggatggacggatCGTGGCCAATCGAGTTTAATGCAATGAGACGTTTAAGGCGAGACACTACAGCCAGAAATGAGTTTGTCAATcatttctcagatttttttggATAAACCACAtctataccacacacacacacacacacacacacacacacctccgctCAAACTGTACTAAtgaaaaagtctgaaaaatacagaaaaatggttTTTTTCGTTCGCAATTATCTGACTCTTTAAGCTCCTCCCACTTCACAATCACGTCATATTTCTGTGAAAAGCtcgtttcctgatatttatgTCAGTGTAAGTCTCATTACGATACACACCTCAATTTCCTTTAGAAACCACAATAATTAGAGAGGAATCACCTTAATCCACATCGggcatttttaaacatttagttttcgcaaaatcattttttttctattttttctcattttttcaaaTCCAAAATATTTCTAGATGAGCTGCAGTcattcaatttaaattatatcttCTCTTATTAAAAGGATATTAAAGAGCAATTTCCCAAAATGCTGCTTATTGTCAGATTTACGTTCGATGTTGTACAGAAAATGGtcttaaaaaagcatttttaataaaaacgcAGATTTTTTGGATAAAGCACATCTATTCCatggtattttcttgattaaacaataaataattgataaatGAGACACGGCCtcttacatttacataatttgCTAACTCATTTGCAtgaataaatatcaaatatcaataTGTGAAGGAATTCAACTATAAAAGCAGGACTTGTTACAATATTAGCGATCAAGTGAAATAAATTgtgaattatttgtttatttactttcttcCTTAGTGATTTTATTTGCCCCTGTTCTCCTGTAGTGTCTCGCCCGTGACAGACGTTTATGGAGCGTCGAGATTTCGAGTGGAAGTGTGTAATAAATCTTTGCAGGTTGGAGCAGAAGGTTATTTAAGTGCCAGTTTAAAGCAGACTGGAATTAAATGAGTGCTGATTGGATGAGTAAGAAATTCACAAAGTTGTTTTTCTTCCAGTTGATCCATTGGTCAAAACAGCGTACTtcaaaatatacacagtataatgAAAACCTAATGTTCTCTCAACCTGAATtaagagtctcacacacacacacacacacacacacacactcacatgggCACAAATCTACACATCTAAACTAAGACATAAGtgaagagtgaaagaaaaggaTGAACAGGCCGAGTGATCTGAATCCACGAGCGATGTTGTGATCAGATATACAACCGAATGTCTCGATCAGAAAATGTagctgttgtgttgttgttgttgtgttttttttgctcctgGGTGTAGGGGGCGCTGTAGCTGAGCGGGTCATCACTGTGTTAGCTTGCTAGGTCTGTTAGCGAGCTGCCGTTTTCAACGACCGCCTTGACGAACTGCCGAAAAACTCGGTCCATGTAGGTGCTGTGACGTGGCCAGAAGCCCTCCAAAAATCCAATATGGCCGCCATGGCACGTGATGAGGAGCGCCAGATTTGGGTTCTGCTTCACTGCTTCGACAGGGATAGctgcgagacacacacacacacacacacacgaaagaAATGAAAGTACACTGATTAACAAGcccaaagttgttttttttcctataacagtatgtccccaagtgttttattccgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69364 True 5947 lncRNA 0.37 2 2268192 2274161

Neighbor

gene id symbol gene type direction distance location
kiaa0232 kiaa0232,zgc:158564 coding downstream 75299 2175540 ~ 2192893 (-)
tbc1d14 tbc1d14 coding downstream 99541 2115603 ~ 2168651 (-)
LOC113524117 NA coding downstream 186436 2057472 ~ 2081756 (-)
LOC113524116 NA coding downstream 193678 2071011 ~ 2074514 (-)
LOC113524112 NA coding downstream 211476 2045162 ~ 2056716 (-)
greb1l greb1l coding upstream 10526 2284687 ~ 2348344 (-)
LOC117597042 NA coding upstream 456625 2730786 ~ 2732506 (-)
trnag-ucc_10 NA coding upstream 467596 2741757 ~ 2741828 (-)
trnag-ucc_11 NA coding upstream 477037 2751198 ~ 2751269 (-)
LOC117597045 NA coding upstream 491357 2765518 ~ 2767521 (-)
LOC117597186 NA non-coding downstream 37211 2228246 ~ 2230981 (-)
G58537 NA non-coding downstream 172066 2066771 ~ 2096126 (-)
LOC113524118 NA non-coding downstream 176178 2090600 ~ 2092014 (-)
LOC113524119 NA non-coding downstream 181412 2085859 ~ 2086780 (-)
G58276 NA non-coding downstream 289649 1978247 ~ 1978543 (-)
G58594 NA non-coding upstream 74558 2348719 ~ 2826890 (-)
G58598 NA non-coding upstream 102432 2376593 ~ 2402304 (-)
G58628 NA non-coding upstream 260954 2535115 ~ 2567804 (-)
G58645 NA non-coding upstream 330316 2604477 ~ 2610252 (-)
G58648 NA non-coding upstream 333591 2607752 ~ 2618793 (-)
LOC113523983 NA other downstream 46093 2204552 ~ 2222099 (-)
G58534 NA other downstream 164181 2071024 ~ 2104011 (-)
G58190 NA other downstream 575195 1692326 ~ 1692997 (-)
G57868 NA other downstream 1219351 985911 ~ 1048841 (-)
trnag-ucc_1 NA other upstream 383842 2658003 ~ 2658074 (-)
trnag-ucc_2 NA other upstream 392606 2666767 ~ 2666838 (-)
trnag-ucc_3 NA other upstream 397739 2671900 ~ 2671971 (-)
trnag-ucc_4 NA other upstream 398610 2672771 ~ 2676041 (-)
trnag-ucc_9 NA other upstream 406420 2680581 ~ 2726284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location