trnag-ucc_9


Basic Information

Item Value
gene id trnag-ucc_9
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2680581 ~ 2726284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69453
CGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcccggccaacGCAGGACCTTTAGCCTTTAGCAAGTGCTGTGTGGACAGGCAGTGCAGTACATACAGTCTAACGCATTCCAAGGTCAGTGCCACTTTGTTTAGTTCTGACGGTGCGTGCAGCCACGCTGACTTGACGTCACTCCCTAaacggggaaggaactggtagttgagaagactccCCCCTGTTGACGAATGgcaatttcaagttgagg
>trnag-ucc_9
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcccggccaacGCA

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU69453 True 270 lncRNA 0.53 2 2680581 2726283
trnag-ucc_9 False 72 tRNA 0.58 1 2726213 2726284

Neighbor

gene id symbol gene type direction distance location
greb1l greb1l coding downstream 332237 2284687 ~ 2348344 (-)
kiaa0232 kiaa0232,zgc:158564 coding downstream 487688 2175540 ~ 2192893 (-)
tbc1d14 tbc1d14 coding downstream 511930 2115603 ~ 2168651 (-)
LOC113524117 NA coding downstream 598825 2057472 ~ 2081756 (-)
LOC117597042 NA coding upstream 4502 2730786 ~ 2732506 (-)
trnag-ucc_10 NA coding upstream 15473 2741757 ~ 2741828 (-)
trnag-ucc_11 NA coding upstream 24914 2751198 ~ 2751269 (-)
LOC117597045 NA coding upstream 39234 2765518 ~ 2767521 (-)
trnag-ucc_12 NA coding upstream 55993 2782277 ~ 2782348 (-)
G58648 NA non-coding downstream 61788 2607752 ~ 2618793 (-)
G58650 NA non-coding downstream 63152 2611416 ~ 2617429 (-)
G58645 NA non-coding downstream 70329 2604477 ~ 2610252 (-)
G58628 NA non-coding downstream 112777 2535115 ~ 2567804 (-)
G58598 NA non-coding downstream 278277 2376593 ~ 2402304 (-)
G58703 NA non-coding upstream 104888 2831172 ~ 2831373 (-)
G58704 grpel1 non-coding upstream 106394 2832678 ~ 2834631 (-)
LOC113524008 NA non-coding upstream 118296 2844580 ~ 2853974 (-)
G58809 NA non-coding upstream 303419 3029703 ~ 3084722 (-)
G58832 NA non-coding upstream 346889 3073173 ~ 3073765 (-)
trnag-ucc_4 NA other downstream 4540 2672771 ~ 2676041 (-)
trnag-ucc_3 NA other downstream 8610 2671900 ~ 2671971 (-)
trnag-ucc_2 NA other downstream 13743 2666767 ~ 2666838 (-)
trnag-ucc_1 NA other downstream 22507 2658003 ~ 2658074 (-)
LOC113523983 NA other downstream 458482 2204552 ~ 2222099 (-)
G58696 NA other upstream 88706 2814990 ~ 2817550 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other upstream 381770 3108054 ~ 3115054 (-)
ptprn2 ptprn2 other upstream 497613 3223897 ~ 3457803 (-)
G59069 NA other upstream 860499 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 903704 3629988 ~ 3639208 (-)

Expression


Co-expression Network