G62849


Basic Information

Item Value
gene id G62849
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11685914 ~ 11688951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74501
ggaaaggaagagaagggtgaagaaaacagaaaataggaGCAAGGAAagggtaaaagaaaaaaaaaaaaaaaaagtggaaaaggaAGCTTTTGGCTTTGCTACCGAACTTTCCAGGACCATATCAGACTAGCAGCCTGAAACTACGAGCTTTAACATGAACCATGTAAGCATGAAGAGATTCCACTATTTCTAGAAACACAGTGTTTAAACACTTAAAGTACTTGCTCGTTCGGTGTTACCCACATTGTATTAACTCACAACTCCATATGCTGATGTGAAAATCATAACCACATAATAATCTTTAACACTGGTCCTTCTTCATTCAAGTTGTGTACAGTCAAATATCATCATAAAATGAGTGCACGAAAACTCCAGCAGCTTAATTTAGATTATTAAGCTGCAAATCCAGCATTAGTCAGGCTGAAGTGTTACGCTCAATTTTACACACTCTGACCAGATATTACATGTATTGTACAGAACTCTGACTGTGGAATTTGAGCACACTCGTATTACAATCAAATTTAACCATATGCAACTTCATATTTAAGTCCATGtcttttcctcacacacacagagataaagaGGATTTAGAACGGCTGGATGGATAGTGCCTACATCCCTAGTGAAGCAAACAGTAGATGAGTTTTAGCTCCACATCCCCCGTCTCGTGATTTTGACTTGATGGGTTTTATCGCATGTCCACAGCTGGCACATGTGAATCTCCCATTTATGAGTGTAAGGTAGATACTAAACTGCCATATTTTGGTGCATTATATGACACCCAAGGCCTGAGAACTTGAAGAGTACTTCAGAATAGCACAAAAATGGACCAGAATCCTCTACATCTGCCATTCAGAATAGTGGCTAAATAAGTTTAGTTTGTGCCATAGATCTGTAAAAGGAAGCACTTCACCCAGCTCCATTAAAGCACGACAGAGCAGAGAGGTTAGCTGAGCAGAAGGTTAAAGGTTATTTAGCTTGCTGACTGATACAGCAGTGGGTTAGATGCTTAAATAAGCTCCTTTGGTTGGAATTTTACCAGCTGCTGGCTTCACATCGTTATTGGCACCTTGAGTCCCAAACACTGCATCAAAATCTACATTCATGGTGGAAATATGAGCAGCCTGCTGGGGAACGCCGCTCTCTAGACCTGAGGACAAAATCACATGCATAGACAGAACCTTAGACCTGGCTCGTACACTGGTTGAATGTTCCATCCTGACCTTCTGCACAGGTACATGTATACAATAACAAAATGCCTTTCACTGTATTTTACTTAGTCATAAGTTTAGATCTGCATATAACCAGGACCCGCTACTGTTTCACCCCTGACTGCTCAGATATACAGGGTTCACACTGATGCGTCAAAGTTTCATTCTCACCCTTATATGGACTTTAATTTAAGCACTACTTTCTTGTATTCAAGATCTACCCATGAGATGTTGCTTGACAAACTACAGCAGCTGTCAAGAAAGggcctttctttcttcttcacaCCAGATAGAGGCTTTCTAAAATCAAATAACCAGATCAactaattaagttaattaaattAGATATTTTGTGACATGATCTCTATatcttgaattcttgaatctgattagtcagaagtagtgaataattttgtataacagcaccacTGATCATGGTCCtgtctgcaaggcaaatcacaggtttacgtTAATGTACTCATGTTATCACTtcttttaacaaagaaaaactgaattgttgatatggtgaagttttctgtgaggagatttaacttttatggaagaggggtacaactgtttatagctactatattgtaagtgttaacaggaactgacttgtttcatggatgctCCACATCACCACatgtaacaaacaaaaaatatttgatgtgttgtttttaacaaataaaaaaatatataatctttGGCAAAATCACTGtggtacaaaataaaaatcaaataaaacacaacaggatgtgctgttagaagaaaataatcagtgtagGTGGCTAACCCACAAGCTGCGAtgggccacatcacatcacccagTCACTCACTATTATCCAATGACTGCACACCTTATGGTgccctgcagtgttttattccctgtGTGAAACATCAAGTTACACTTTCTGAGCATCAGTGGTACCGTCAGTATAGCAATGAAGGTCTCAAATGCTATTCACAGCtgcaataaatattaaatacttgAATACATTTTCCTGATGCACTATATCATAGGCTTTATTATCAGAGTACATCATGTAGTGCAGCCATGTTACATATGAAACGTTTTATCATTTGTCTTGCTCTCCTGTGTATATCCTTTCTTCGAGCCCTTCTGTTCATCCACCACATGAGAGCCAACAAAACTGTCCCTCAGCCCTTCTTCCACGTCAACAATGTCCTcatttcacacttttattttttaaggcaGGCCAGATGGATGAGCACAACCATTCAGCACAGGTCACACCAACACTAACGCCTGCAACGGTCAaaccactcacacactgtaGGCACTGCATTCAGATCAGTACACGAGGGGCTATTTAAAAACCGACATCATCTGAGGATCTAAGTGAACAAATGAGAGcaAGCCATGGCCAGGAGTCGAAAAAAGCACTGCTGTCCTGCTCTCTGGGGAGTGGTGAGATTactctttcccctgtcaatcagagccaATCATGAACATGTTTGAAGTTATGTATGTAGAAGGAGGCAGattgcacttttttccccccgaGTGTTCAACTGTCCTGTGACGTAGCATGAGCTGCAGGTCAAAAAGGTGcgcttttatctgtttactaGCTGCTGTGTAATAGGCTAATTCTAGCTAGTGGTCAGGAAATGGTAACAACaaaaattgggagaaaatggggttttaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74501 True 2884 lncRNA 0.40 2 11685914 11688951

Neighbor

gene id symbol gene type direction distance location
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding downstream 59069 11622885 ~ 11626845 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding downstream 166263 11509731 ~ 11519651 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding downstream 253662 11426298 ~ 11432252 (-)
ccdc166 NA coding downstream 303995 11377829 ~ 11381919 (-)
LOC113538167 gmpr2,LOC108267954,LOC107753927,LOC107668803,LOC101077150 coding downstream 338326 11342706 ~ 11347588 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding upstream 28394 11717345 ~ 11796600 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding upstream 145417 11834368 ~ 11860113 (-)
ccnb3 LOC108267136,LOC108410408 coding upstream 380092 12069043 ~ 12083211 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding upstream 436870 12125821 ~ 12148492 (-)
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding upstream 461468 12150419 ~ 12168101 (-)
G62846 NA non-coding downstream 2898 11681668 ~ 11683016 (-)
G62832 NA non-coding downstream 74257 11611120 ~ 11611657 (-)
G62831 NA non-coding downstream 75793 11609921 ~ 11610121 (-)
G62830 NA non-coding downstream 76140 11609548 ~ 11609774 (-)
G62813 LOC108267932,LOC108267938,LOC108267738,LOC108267937,LOC108267241,LOC108267931,LOC108267739,LOC108267740,LOC108267929 non-coding downstream 77967 11557584 ~ 11607947 (-)
G62850 NA non-coding upstream 2244 11691195 ~ 11693318 (-)
G62818 NA non-coding upstream 9736 11698687 ~ 11705655 (-)
G63015 NA non-coding upstream 178499 11867450 ~ 11867703 (-)
G63031 NA non-coding upstream 208894 11897845 ~ 11898101 (-)
G63058 NA non-coding upstream 283760 11972711 ~ 11972947 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 150671 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 270017 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 325870 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other downstream 372298 11286449 ~ 11313616 (-)
mrpl52 mrpl52 other downstream 503545 11177685 ~ 11182369 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 173674 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 558011 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 583267 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 795772 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1597048 13285999 ~ 13308478 (-)

Expression


Co-expression Network