G63062


Basic Information

Item Value
gene id G63062
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12004007 ~ 12004319 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74721
aaagcattattCAAATTTACCATATTTTTGTAATACTTTACAAGGTTCCCCTAAGTAATATTTTTTACTGCATTAGGtagcaaaaaaaacaagtataattaagtgaagtgaagtgacttgtggccaagtatggtgacccatactaggaatttgtgctctgcatttaacccatccaagtgcacacacacagtagtgaacacacacacacaccgtgaacacacacccggagcagtgggcagcctttttttttttttgctgcggcgcccagggagcagttgggggtttggtgccttgctcaagggtctcacctcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74721 True 313 lncRNA 0.43 1 12004007 12004319

Neighbor

gene id symbol gene type direction distance location
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding downstream 143894 11834368 ~ 11860113 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding downstream 207407 11717345 ~ 11796600 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding downstream 377162 11622885 ~ 11626845 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding downstream 484356 11509731 ~ 11519651 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding downstream 571755 11426298 ~ 11432252 (-)
ccnb3 LOC108267136,LOC108410408 coding upstream 64724 12069043 ~ 12083211 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding upstream 121502 12125821 ~ 12148492 (-)
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding upstream 146100 12150419 ~ 12168101 (-)
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding upstream 166206 12170525 ~ 12182262 (-)
rbm4.1 LOC108267459,LOC106608592 coding upstream 181205 12185524 ~ 12189447 (-)
G63058 NA non-coding downstream 31060 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 105906 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 136304 11867450 ~ 11867703 (-)
G62818 NA non-coding downstream 298352 11698687 ~ 11705655 (-)
G62850 NA non-coding downstream 310689 11691195 ~ 11693318 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding upstream 63013 12067332 ~ 12123010 (-)
G63219 NA non-coding upstream 321141 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 350073 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 663122 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 705310 12709629 ~ 12709841 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 37104 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 468764 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 588110 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 643963 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 242643 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 267899 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 480404 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1281680 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1431737 13436056 ~ 13440520 (-)

Expression


Co-expression Network