G63578


Basic Information

Item Value
gene id G63578
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12767949 ~ 12797341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75327
CTTTTGTTCAGGGAGTTCCAGTAGATTGGCTCCATGTTCGTCGCCGTGATTCCGAGTAAATCCACCAATAATATGAGCAGAAATCCCAGCGCGTTTGCACAGCTCGGACTCGCCATGTCAAGCCCAGAACCCGGTCTGCGTTCCCCCATCATGGATAAAGGAGATTTTCCCCCAGAACACAGCAGGAGGAAGCCTTCAGGAACAAAGCCTAAAGCTCAGTAAGGCTACAGGGGGAATCCGTCAGTGCGTTAAAGCGCAATGTGTCCGCATGGATATCAACACAACACCAAAGGCACAAAAACCCCGCACGGTTTATTACTGTCGAGTTTGGATTATCCGCTCTGAGATGAAGCAGATGAAATCCCACTAAATATTCTGTAAAGGCACACTTTACAGAAAGCCCCAAAACGACTAGACTAGTATTTCTTAATTGTCGGCTTTATCTTCTTTCCTCAAAGTCTGTGCTCTGTCAGTCGTGGAAAGAAAACTCCACTAACAGCACCAATCCTGACACAGAGTCGCTTTTAATCCGGGGTTGTCAGCTTTACAATTGGCAAGAGTCTAATTTTATTGAAATTCTCGCGCTGTCTTCGGCTGCAAGATCTCTCTTCCTTCCCATTACCCTTTTTCGTCCCTTCCTTCTTCTGCTGCGTTTTTTCTTCCAAGAGATGAAGGATgcaaaaaattagaaaattaaaaaaaaaaaaaaaaaaaaaaatcacacacaacagaGAAAAGCAGTAATCGCATATACAGTTTACACGGCAGCCAGTAGCCATGGGTATGAAGTCTGTGTTTGAATACGGTTTAATTGAGACAGCAGCTGAAGGAAGTGAAGTTTGTGTTTGATACTGGATGATGACCATGCTTGCATGTGTACGTAGCAGAcctcactgtgtgtttgtgtgtgtgtgttagccatGTATGCAGTAAGGGTTTTAACAGTCTGTACAGGTATTGTCTGTCATAGTTCCAGAGTTCCAGTAGCTCGCGCTCCGCTTAGGCACACAATGATGAAGTTGATCACCTACTGAGGGAGCCATGGAGGTACATCACACTCCTATCGGTTCAGTTACTCCACACCTTTCAGGAAAGGACGTGACATCTAAGAGCAGGTAGCATCGGTGGTGTTcctcccagagagagagaaagagagagagagagacacacacacagagacagacagacagagataccCACACAAGTGCAGAAAGTATAAAAGATGAGATTAGGaggaaagagaatgagaaagaaaagccGGCCACTGTCCTTGTCAGATGCTCTGGTATACTGGTCTGCAAAAAGGCAAGAGATAAGAGACAAGTGTGCAACATGAAAGCAATGAAAcaatatgttttctttaaatgacaCACATGTCCATTTTAATTAGTGCCATTACCAGACAGACAGTTCTGCTGTTGCAGTCACAAGCAACTCCATGCTGAAATTAATCCACAGCTGTGCAGAAGCTCTGTTCATCTCCTCAAATACTCATCTACTCCTCAGTCAATCTGCAGAATCCGCTGGAATAGTCTCTGTTCGTCAGCCAGAAACTAGCAGTTAATAAATGTTCCTTCCTGCATCTTGAGTGCGTCCACAGGAAATCTCCAAAAAGCTGAACACGGAGTAGGAGTATTCCCCAACATTCAAAATGTCTGATGTCTTATTAGCCTACTTCATTGGTGTGATCAATATTATGTTCAGTCCTAAGAACTGGTGAGTtaagaggacaaaaaaaaccaacaaacaaaaacaaaccccctccaaaaaaaaaaaaaaaaccagcatcACTTATGTACAAGTTCAAAAAGAGGGAACAACATGCCTGTTTAGGTTCTCACTGGAGGGGCTTTAGCTGGATTTGAAGTGTCCGGCCAGCAATGCTTCAATAGCGCCCTCTGTCTACCTCGACATGTCCCCACAGGTTCCTCACAGTTTTGAGTGTGTGAAAAGTGCATAGTGAGAGCATCGAGGCAGTGATCGTTCACTCATTATCTTCAGAAGAAAAACGTCAACTGCTGCGATACTCCCTTCGCCCACATAGAAACAGAAAGGCTAATTACAGTCCCCAGGCTATGAGGACAGAGCTGAGGTCATAAATGTCCCTCATGTTCTTCTGTACTTTCCAACACATCACAGACATGTCCAtctttgtattttcattaaacTTTTCTAAATCAAAATCTAGAGGCCAGTTCTAGATACTCCGGGGAAGAAAACTTTTAAAGCATCAACAATCGCATTCGTGCATTTCAAGGTACCGAAAAGTAATGGTCTGTgctatttttgatttttttttttccaggaacacaaactttttttctctggatgaaaaagtatttaaatccactgtgaagaaaaaaaataggcaaaaagtaaacaaaaacaaattcaacAAACTCAGTAAACAAAATATGGTCAGCTTTGTAATAACTGCTTATCTCAGCACCCAATCCCCAAAGTCACAAGAATGGAGACTTTCTGTATGCCACACCCATTTCACAACAAGGTCATGTCATGTGATTACTACAGCACCTCCTCCCCAAATGTTTCTTAATCCACCCTCCAAAAAAGGGAAACACGCACCCACAAAAGTCCAAGTGTTTTTCTGTAAACAACCAAAACTCCAGTATGGAATAGATTTTTTCGCTCTCATCATCATAGTCATAATGTCTATATGAACAGGATTGTAGAGGCAGTGTCTTCTGGCGGTAGTCGTCTTGATTCTCCAGCTGCTTGCTGAACAGGCTTTTGACAAAGACGCCATTCGCTCCATTCCAATATCCGACTACGCTTCCACGTTTgagctgaataaaaaaaaaatccggcttcattgttttttgttgtttttttttttcaccttttttggaatacattcaatatttttttgtaaaaagacACAACACACTTCACATGGTGGCAATGAAACTAAAAACTACAGGAAAAtcatttcaaaaataataaaaaaagtagcAGCCCCAAGTGCTCGTTTGTAGTCCAAAtacttgtgtgtatatatgtgtatagaGATACATATATGCCATAACAAAGAGTCAACAACAAACAAGTAACATTAGATGAacattttgtgcacatttttGTGCACTTGCACAGTTTGATGGGATCTATTTAAGCCAGTCAGTCACTTGCTCAGGAGTAAGAGAGTGGACAACAAGGCAATGTGAGCCACATCCCCAAAAAAGTGGACAATCCTGTCAATGGACTATCCCCAGGCTACACTAGAAGAACTACAGAGAATGGTGTGCACAACGCACAAAGCTCTTGGTTTATAAGCATGGGAGTGGGGTCTTTTCTGAGACACACTCCCAAAAAATAATGTCTCAATGGCAGCAATGAACACCAACCACTCGCCCGTTTAAGTTCTTAGGCACATGTGTGGACAGAAACGCACTCTCtcgcaaacacacagacacacacactcaaatgcaCGCATATACAAATAACCTCAGGACTTGGCCCATGAACCTACTAGAGGCACTGATACGGGTGGTGGACAGAAGGGGGTGGGGGGGAACACTTGCATGCAGAGTACTGCTAATTATAAAAGAAgctaaagctttttttctgGTTGCATCTACAGCTTTCATATCCGTCTGGGGATGAggaaatgaccaaaaaaaaaaaaaaaaggatgggtTGTGCCATTGCCCTCTGTCCCCCTCAGTCAAATACACAAAGATGCTGCAAATAtacaacatacacaaacatacattctctcacacactttcactcaca
>TU75329
TACTCatattttcaaacaaaaacCCAAACTATTTACACTCTTATTAATCTGtatgttatcattttattatcagTAAGATTTCACCgttaaatctgattttaaaagTTTAGCTACAGGACAAACTTAAGTAGAATGGGAATAGGCAAATGCGTCACCTCCACTACAAATTACATGCAAATGATGTGAAGACAAGAAGATTCCAACTCAATACTGATCTTCTCCCTTCGTACTAAGACGATGGGAGTTGAGAAATATCTAAGAAAttccagatgttcctgcagccaTTACTCAAGTGTTTGGTTTAGAGGATAAGGttggttgttttcttttttttttggggggtcaGATTATGATCAAGCCCAAAGCTGGCATGGGTACATGTACCTGCAACTTTTGTCCTTGAAGATAATGTGATCTTTAATGAACAGGGCCATTCATTCCAATCACTCCCATCATTCTCgttaaactaaattaattatttagtttaattaatCACCACTCATAACAAAAGGGCATCATGCACTTAAGAACTCCAACCATTTTTTTCCATAGCCATTTCAAAGCAGAACCATTCTGTCAGATAAATCATGTCTGTTtaacagcactgacactgttaAAACTGCATGTGGCTCAAACTCTctcaaaaatgaccaaaatgggCCACCCAAGTTACAGTAATTTCAGGTCATTCCACTACATAATCAGTCCAAACTACAGCTTTTTAACACAATGCCTCATTTTCACCATGCTGCATTTTCTGTAACACAAATAAGCCTCAAACTATTCACTTAGAATTAGCCAGATTCTATTTAAACTGACacaatgtctttttatttgttaaatttagGGCCGATGGGATTTGTCACATATTTGATCACAGAGACATCACACTTAATCCTCAACCAAAGCTCTGATCAAGCTACTTAACTCATTTAGTTCAGGAATAAACAAGGGAGTAAAATCAGGTTAACTAAACACActaagcatttttttccccaaagtacAGGCTTGTCTGTACAGTTAAGGCATGTCCTAAAGGGAAcaagagagaggagggaaaaaaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctatctATATACCACCTTCATAAAGTGCATTAGTTTGAATAAGGTGCTTATTGTGTAAGTGCCAGAAGTTTAATCACCCCAAATATATCACCCCTTTCTCCCCACCACACCACTACAGAGGAAGCCTCAAGTTGTAACGGGTGTAAATGAGCACCAGTACTCTATTTACACCCACTTTATACTTCAGCTGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75327 True 3756 lncRNA 0.42 2 12768682 12797341
TU75329 False 1296 lncRNA 0.36 2 12767949 12772794

Neighbor

gene id symbol gene type direction distance location
pop7 pop7,LOC100709557,LOC107659735,LOC100707405,LOC102794197 coding downstream 31431 12734646 ~ 12736518 (-)
ufsp1 ufsp1 coding downstream 55105 12710191 ~ 12712844 (-)
LOC113540289 LOC108267594 coding downstream 60905 12697759 ~ 12707044 (-)
LOC117597087 LOC108267594 coding downstream 76111 12680361 ~ 12691838 (-)
tmem102 tmem102,LOC108267795,LOC108434872,LOC107659729,LOC107750772,LOC107560290,LOC107564774 coding downstream 288985 12464516 ~ 12478964 (-)
LOC113540725 NA coding upstream 406932 13204273 ~ 13204462 (-)
bcl6b LOC108267673 coding upstream 419559 13216900 ~ 13223130 (-)
sst5 LOC108267674 coding upstream 445328 13242669 ~ 13243766 (-)
tm4sf5 tm4sf5,LOC108442834,LOC108410825 coding upstream 466930 13264271 ~ 13267825 (-)
si:ch73-335l21.4 LOC108268348 coding upstream 590992 13388333 ~ 13389965 (-)
G63555 NA non-coding downstream 58108 12709629 ~ 12709841 (-)
G63502 NA non-coding downstream 97449 12667441 ~ 12670500 (-)
G63267 NA non-coding downstream 412177 12354392 ~ 12355772 (-)
G63219 NA non-coding downstream 442278 12325460 ~ 12325671 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 644939 12067332 ~ 12123010 (-)
G63580 NA non-coding upstream 1825 12799166 ~ 12872342 (-)
LOC117597210 NA non-coding upstream 144329 12941670 ~ 12951095 (-)
G63817 NA non-coding upstream 318732 13116073 ~ 13116940 (-)
G63789 LOC102193867,LOC104942379,LOC100699848 non-coding upstream 396721 13194062 ~ 13195881 (-)
G63787 NA non-coding upstream 401678 13199019 ~ 13199909 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 278387 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 490280 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 518195 12246962 ~ 12249754 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 801046 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 1232706 11524826 ~ 11535243 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 488658 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 638715 13436056 ~ 13440520 (-)
G64436 NA other upstream 1435468 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 3082130 15879471 ~ 15904355 (-)
smim20 NA other upstream 3176238 15973579 ~ 15991985 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G68602 NA non-coding CI01000012 null 437262 ~ 437540 (-)
grasscarp (Ctenopharyngodon idella) G499314 NA non-coding CI01000344 null 2094554 ~ 2097570 (+)