G64147


Basic Information

Item Value
gene id G64147
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13564633 ~ 13569597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75988
attgttgtaaatattttttttattgaaaccAGGGTTTGGGGAAGCCAGTCATGAGTGGACTTAGCTGCTGCTCTGCTTGGCAGCCAGTCTCTTATCTCTCTCCTCAGCAATGGTCAGACGGATACCCTTTCCACGAGGAATGGACACCCATGGCTTGTTACCCTGGTTAAGTGAACaaccacacaaaagacatgTTTAAGCAAATTACTATCAGCATTAAGAGATCAGCCTTCACAGCACTAATAGATACTAATAAGGTACTGGTTCATTTATATTACAACTGAACctggctcattatttaaaaaaaaataaaaaataaaaaaaaacaccCTCAACTGCATCTTTACCTAATCAACAGCAAACTGTTGTTAAAATGCAGCCATATTCATTTGTCTTCACAGTAAAACCACGTTTGTCTAATACTGTAatcaaacttttttaaatttaaaataatgtaataaatagatTCTTAACACGGCTATCATTGctactcatttttttaaactctaaatGGTACCAGTTACAAGGTACACATACAGAGAGTATCACAGTTCATCCACATCTATGTCTACATACGAGGAGCAGTTGAATCTATGAACGCAAAAACCTGCACCTGCTTGGCATATTACCATTTACCAGTAATATTTGGACAGATATCATGTGAATGCGTCTTAAGTAATGTTGCCAGAGAACGTCTGTAATAATTATGATGCATTCACGTGGCATTAGCAAtatctgtataaatcacagagatgggaaCGTCTTCACAACGTACACACAGCTATCACCGTGAAAAATTGTATTAcatacacctcattttaatataCACTGCTTTGATTTTTACTATAAGCACCAGAAACGTAAGAATTTTATCAAAACCCACCTGTTCAAACACACGTCTCTGATAAGAGCATTTAAAcatcatctatattttattgttctgcttttttttggcAGGAGAACATAAGTGCAATATTAGTTTTACATGTGCAATACTTGTCACTTTCTTTTGTACTGTACTTTTGAAATCCCTATATTTATTGCTcggtttattttcatttgtattgCGGtgcttttaattcaattttattttttactgtaattttccTTAATGGCATTGGTTTGGGATTTTACCAACAGAATTTCATTGCATCaaacacaatgacaataaaactttAAATCCGGTGAGAAAAAACTTCTACCGATCATTTTATAGAAGATAAAACATGACTTAAAAGTTTCCAAACAAGTGTGTGCGTAGTCCGTGAAAGATTACATACTTCAGATGGGACTAAAATCTGAGATACTTCTGTAATTATTACGTTATCCCACCTCCACATGTAAAACTGGTCCAATCTGAATAGGACTAATGACTCCTAGAGCAATGCTGAGATCTGACATGTACATAAAATGACCTCAGAGTTCAACTCTTTCTCACTTATATGATCTTACGAGTCAAGGAGGTTCTTATAAGAATCTTGTACCATGGTTGGGCCATCAACTTAAATGCCTGCACATCACAACCCAAGTGATACGACCTGATATCAACTACTTAATTTCTACACTTTTACTCCCGTGACCACACCGGCTTACCCATAAATCCAGCAGGGTAGGTGATGTCAGTGCGGACCTTGCCATCGACCTTGATGAACCTCTGCATGCAGATCTTCTTGACTTCGTCTCCGGTCAGCGCGTACTTGAGCCGGTTCCTCAGGAAGATGATGAGGGGCAGGCACTCCCTCAGCTTGTGGGGACCGGTGGAGGGCCGAGGAGCAACACTCCAGTAAGTTTGTCAAGCATCCAGTGCTTGGGCGCTGCGACGCGCTTCAGGTGCTTCTTCGGTCCTCGGgcctaaaacacacaataacCACAAGTTAATTTTAAGTGTTAGTCTGAAAccctgttttcttttcattttccagaGCAGTTACTCAGAAGCAGTCCCGGCTAACGTGCTCAGCTTTCTCAGCACTAGAGAGCTAACCCATTAGCTTCATCCACACGAACACAGACACCAGCCAAGGCCTTGAGTGAAAAAACCGAGCAACACTCACTAAAATGACACTACTTTCACTAATATTTCGTCTTTttacagaaaagacaaaactaCCAAAACTTTCAAGAgcaaagaaagagtgaaagttGTAAAAACCTGTGTTAAGACGCCATGCAAAGCTAATATTTCAGCAGTAAAGAGAGCCACTGTACACTGAACCCGAGCAATTTCCCGTAAACATCTTTAACACAAAAATCTAACCAAACCACAATAATATAAGGAtttatgaacacacactgtgaggaaatatgatattttaatgCTTTGGTTGATTAATACTGTGTAAAACGTCTGATGATTATGGATGAAATCTGAAGAGAAGCGAAAAAAGAAATCTGCTCACCATGTTGGAGTCTGCGGAAAAGGGCCACCTACTTCCGGGGAAAGAAAGATATGCCGCACTACGGCTAGTGAAGAGGGACAGTCAGAGCGCAATGTGGGGCGTGCACGCGCTGCTGCCCTCTAGCGGCTGGGCTCACAATCACGTTCAAACTCAACCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75988 True 2559 lncRNA 0.39 3 13564633 13569597

Neighbor

gene id symbol gene type direction distance location
cnpy4 cnpy4 coding downstream 31369 13527886 ~ 13533264 (-)
ntn5 LOC108267835 coding downstream 43107 13505741 ~ 13521526 (-)
si:ch73-335l21.4 LOC108268348 coding downstream 174668 13388333 ~ 13389965 (-)
tm4sf5 tm4sf5,LOC108442834,LOC108410825 coding downstream 296808 13264271 ~ 13267825 (-)
sst5 LOC108267674 coding downstream 320867 13242669 ~ 13243766 (-)
usp12b LOC101154659,LOC107707922,LOC108412583,LOC106934565,LOC101071205 coding upstream 115139 13684736 ~ 13695000 (-)
col4a5 col4a5,LOC106608922 coding upstream 177642 13747239 ~ 13797445 (-)
sema4f sema4f,LOC108267878 coding upstream 343086 13912683 ~ 13967911 (-)
dok1b dok1 coding upstream 448861 14018458 ~ 14033040 (-)
LOC113539907 paip2b,LOC103027680,LOC108428580,LOC107721669,LOC108426126 coding upstream 472354 14041951 ~ 14054035 (-)
G64164 NA non-coding downstream 9556 13554864 ~ 13555077 (-)
G64163 NA non-coding downstream 10287 13554088 ~ 13554346 (-)
G63907 NA non-coding downstream 97231 13450437 ~ 13467402 (-)
G63908 NA non-coding downstream 97915 13447955 ~ 13466718 (-)
G63920 NA non-coding downstream 121803 13442529 ~ 13442830 (-)
LOC117597078 NA non-coding upstream 146728 13716325 ~ 13723916 (-)
G64222 NA non-coding upstream 168992 13738589 ~ 13743598 (-)
G64261 LOC108267418 non-coding upstream 299412 13869009 ~ 13872279 (-)
G64252 col4a6 non-coding upstream 308433 13878030 ~ 13911820 (-)
G64267 NA non-coding upstream 319091 13888688 ~ 13890217 (-)
zgc:194312 LOC108267841 other downstream 124113 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 256155 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 1075071 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 1286964 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 1314879 12246962 ~ 12249754 (-)
G64436 NA other upstream 663212 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 2309874 15879471 ~ 15904355 (-)
smim20 NA other upstream 2403982 15973579 ~ 15991985 (-)
acox3 acox3 other upstream 2484931 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 2849567 16419164 ~ 16426624 (-)

Expression


Co-expression Network