G66865


Basic Information

Item Value
gene id G66865
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18859042 ~ 18863417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79254
CGGAGATCCTGAAGAAGGACTTCTAGAAGCCTGGTTGAGAAGCGTCCTAGGCTCTACCGTACTGATGGCCTGCAGAGTTGGAGCAGCGGTCCTCTCGGACAACATTTCCAGGACACTATGCACCATCTGACTGgcacatagagattgtgccagctcctGTAGACAGAGGCCAACCCTACAAGGATCCTGAGGCACCAAGAGATGGACCAGCTCCAGCTGGTTTCTGCTTCATGAGGACTTGGGTATTCAAAGCAACactgccaaccctatgtggactttgaggaagacaacaacctccaaattaatatacacacacaaaatctacatgactatacataaatgcagaaagggtattgttcatatcacactccagtgtcacccaaatgaggatgggttcccttttgagtctggttcctctcaaggtttcttcctcatctaagggagtttttccttgccacagtcgcctcaggcttactcactagggataattttgtctaacatctaggactgtttggatgtttttgtttgttctgtaaagctgctttgagacaatgttcattgttaaaagcgctatacaaataaaatggaattgaatttgTTTCAGGGCGAAGCTGCACTGGCTGTGTGTCCGGCATTGCCGATTGAAGGA
>TU79255
GAGAGGTTCAGTGGGCTATTTGCTTTGAATGAATGGTTAGTCATGGTGTCAAGACCAGAAATTACCCTTTGTTGATAACTGGAATTTTTTCTGGAAGCGTCCTAGGCTCTACCGTACTGATGGCCTGCAGAGTTGGAGCAGCGGTCCTCTCGGACAACATTTCCAGGACACTATGCACCATCTGACTGgcacatagagattgtgccagctcctGTAGACAGAGGCCAACCCTACAAGGATCCTGAGGCACCAAGAGATGGACCAGCTCCAGCTGGTTTCTGCTTCATGAGGACTTGGGTATTCAAAGCAACactgccaaccctatgtggactttgaggaagacaacaacctccaaattaatatacacacacaaaatctacatgactatacataaatgcagaaagggtattgttcatatcacactccagtgtcacccaaatgaggatgggttcccttttgagtctggttcctctcaaggtttcttcctcatctaagggagtttttccttgccacAGTCAGCCTTTTGAACATCTTATAGTTGACTGTGTAGGTCCTTTGCCTAGATTGAAGTCTGGTGCAAACTATTTACTAACAGTAGTCAcatttacatggacactttttgtttcaatcggaatgaaattaatcggattgattaatccgatcgcagtgtttacaagaacactgaataaagtaatcgggctgatatgcgcgtttacatgacagaatcggatttgatcttcgGACATGCGCCCAGTGCATGAATACACGTTTCCAGCCGTTCcaacacgcagatactagcagccactcttgccattgcttcttttttgccATTGCAGATAGCAAAACTATCACTTCAACCCCTGAACGTAGAAAGAGCACACAGCTGTCACGTTAATCTATTAAAACCGTGTGCTGCCCGTGCGCTTCAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79254 False 649 lncRNA 0.46 3 18859042 18862711
TU79255 True 932 lncRNA 0.45 3 18859204 18863417

Neighbor

gene id symbol gene type direction distance location
sod3a NA coding upstream 7462 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 428683 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 615245 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 776612 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 830991 18020211 ~ 18028051 (+)
ppp1r15a NA coding downstream 87630 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 307282 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 464614 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 490963 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 525188 19388605 ~ 19393118 (+)
G66855 NA non-coding upstream 25215 18828179 ~ 18833827 (+)
G66754 NA non-coding upstream 189792 18669042 ~ 18669250 (+)
G66670 NA non-coding upstream 367461 18491372 ~ 18491581 (+)
G66654 NA non-coding upstream 427906 18430562 ~ 18431136 (+)
G66637 NA non-coding upstream 476880 18381956 ~ 18382162 (+)
G66888 NA non-coding downstream 46229 18909646 ~ 18910488 (+)
G66887 NA non-coding downstream 47640 18911057 ~ 18911397 (+)
LOC113540244 NA non-coding downstream 257421 19120838 ~ 19122624 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding downstream 482427 19345844 ~ 19351904 (+)
G67208 NA non-coding downstream 510139 19373556 ~ 19375720 (+)
G66864 NA other upstream 390 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 650478 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 715411 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 848080 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1238963 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 1127267 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1284378 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2156841 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2450801 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2765659 21629076 ~ 21640157 (+)

Expression


Co-expression Network