G67205 (rpl34,LOC107573163,LOC107566275,LOC107681344)


Basic Information

Item Value
gene id G67205
gene name rpl34,LOC107573163,LOC107566275,LOC107681344
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19345844 ~ 19351904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79640
ataatcccTAATTTATaagccaccgtcacctctggcttactcattagggataaattcacatatttacaatttattttggtttaatttaatttgaatctatttatttctctaaagctgctttgtgacaatgtccattttcaaaagcactatacaaataaaattgaattgattttaaaagaaaaaacaaacagtccATGCCTAATTTCACCTAAAAACGCCAGTCTTATCTTTTCAGatgaaaaaatactttattttgcATCTGTAATACAGAATTGATCCGCATTCCCTTTTAAtcaatgaaatatttcatacagTGGCCTACCCACTGTAATTTTGATGTAGATGTTTATCTAAAGGATGGGTTTAGCGACGCTGAGTTCAGGCAGTtatctgtgtagagtttcattgcatgctctccccatgtctgtgtgggtttcctgctggttctccggtttccttccacctcccaaaaacaagcaAGTAGgataaattgtccctaggtgtgaatgaatgtgtgaatatgtgtgtgtgtgtgcacatgatgccctgatcaggataaagcagttatagAAAGTGACTGAGAATGAAAGTTTATCTAAATGGGCTGTCTATACCtggaatgttagtgtgtgtgtacaaaaataaaagctaaaagcaACCTTTGGCCAACATTCCTTGTCAGTCATAAAAGAATGTTGGTGGACTTTTTAAGAACGTTATGAAATGGTTCCcaaaaaaacaaccaacaacTAACATTACggaaatgtttgtgtgtttgctgttcaCTTATTCCAATTctggcaattaaaaaaaactaatttaaatgCACAAACTATGGACTGTAACCAGAGGTAGGCATAGAAAAACATGAAACCTACAAAACAGAATATTTTCCACAGCACTactttcagcttttattcatttcagttacACTTTACTATTACTAATCTACTAAGTGTAACCTTTCATACTTGATCTGTAAATTAGGGTCAAGGACAACACACCGACTGCTGCCACACTTCATTTTATTCAGTGGTTTTATTTGAACAAATCTAGGGAGCATAATGCCCTTTAAAGTATACTGCTTTTCAGTATTTGTTCAAAATGACTCTACCAAGTGTAGTCATGGGCAGTCTACCTCAGAAGTGCACTGAATAAGCTTCACTTCAGATGTTTTGCTTGTTTCAGCAAAAAAGTTCCAATTAAAGTCTACAGTTTATATTTGGTTCATTTGTAAATTcataaCAGGACACAAACAAGTGTGTTccgaaacatttattttaaagtacaaACACTCATTTACTTAGATTTCTGACTCTGTGCCTGTGCCTTGAGTACTTTGACAACGATCTTCTGCTCCTCAATAAGGAAAGCACGCTTGATCCTGGAAGAGACACAAAAAATGTCAGTTAGCTTCATGATGTGTATATGCACCGTAAATAAATtatcaaaaagaaaatgtacaacAAATTTCTATATTGTGCCcaagtttacatttttatactgGTTTGGAGGACAAGTTAGAAGTTTGTCACGTATTTACCATTTATATACCATCAGAGAGGAGGGgaagagaggggaaaagaggggaggggagggaggggaaaaaaaagaaagaaagaaagacagaaaaaaaaaaaaaaccccaaaattcAAACACCATATCCTATATGTGCATAATGGACATGACGGATGTCATCAATAGCCTACTTGGATCAAGACAGGGTTACAAAACTGCAGTGTATATGTACTGTAAGGTTAGTAATCAAGACAGCTGGAATGCACATGTGCACTCAAATGATCATTAATGTTCTGATGGATCCAAGTCACTCATATTCTAATACTGCTTAAATAAAATCAGGTAGCCTGGAAAAAACATTCCTGTCTTGCCATAAAAACAGTACCATCAACGGCCAGCAAGTAAATTCCCATGCATGCTATTCTACCAGCAAATAATGCCACTCTCAAAGTAACAAATTTCACAGAAAAATCTGCTACCTTCATTCCTAACACATTAATTGCCAGATTTCCAATTTTCAGAAAGCACAAATGACTCAATTCTTAGAGCCAGTTCACAACAGACATTTCTGAAGCAATTTTTCTGCAATTACGCATCCATTTTCACAAGCGTTTCAATCCCTGCCAGCATTAGAGATGCATAAAATGTGTCAAGCTGTGTTTGTCATCTCTTGTTCCATTCTCAAACCCAAACGAAGCATATACTGCACTGAAATCCAgtgaaatcacacactcatttcataCACTGTTAGATTTTAAGTGTATGTAAAATCATAACATACAAAGCTATGTTTGTGTAATCTATAGCTGCATAGTAATGCGTTTGTACGATAGTGATAATCACCTATTGCCCCTGCATCAATGAAATGGATATATACTGCAATATTAGTTTCTTGATAAAAATTAAGCATGCAGACATAGCAGTGATGTATACGGGATAGACGGACACGCCTAGCATAAATTCAGGGTTAGTCCACGCCAATGACCTTTTTGCACATATCAGTAAATATTAGGATACTTCCAGCTATGACTACAAACTCTCCCAGATATGCTTAACACTCACTGAAGCTCATGAGAAGTGAGGCAACCTGCAGTATATATTCCTGCTATATTATGCCATTCATGATCCCAGCCCACACACACTTGAGACGCAATTACACGCATGAGTAATAAGAAAAAGCCAATTTAGTCATTATCATTAACTGTTTAACTCTGTCCTGGAGGAGTCTGGAGTTCACACACTAAGCTTAGACAACcagaagaaaaataatgcactcCTATACGCAACAAAAAGGTATGGCTTTAATTACTCAAACCAGCGTAACATTTTAATGCTCTTACCTGTCACGCACACATTTGGCGCACATGGAACCACCATAAGCTCTGCTCACATGCTTTTTGGTCTTTGAGAGCCTCATGAGAACCTGAGGTCTCACTGCACGGATCTATTTTAGggaggggaaagaaaaaaaaaaaaaaacacacaatctgAGCTCTTTGGATTCTGAACACACTCAACAGGTTCATTCAAACTTACACATCAACAAAAACAGGACCAAGAAGAGTAACATGAACACAGAACCTAGTTGctgcatagaaaaaaaaaggccaattTTAGGGAAGTATAATTTAAAGCTGAACTGAGCAGCATCCATTACTCTACCATTTCAAGCCTGATCAAGTATCAAATAATTGTGTCAAGGTAGTTCAGGGGCAAAACAAATGCACTTTGAAGTGTAGACGACAGGCTTATTTACAACCTAATTCAGATTAAACAATGCCGATCCAGCCGGGTGCAAATTAAAATTGTGATTGGGCTGTCAAAGTTTTCAGAAAAGGAACAAACAAATCCCATACCTAACTTTGAAGCTCAGgatgaaattaaaacagaaattattaTGATAAAATTAAGATATTGCCTCCTTGTGATATCTAAGTCAGCCGCACACTTTTCTTTGTGCTCTTGTGATACAAATGCATAGTGTTATGCTAACATTCACTTTGTCTACTCTGTGATGGTTAATTGTACTAAATGGAATTTTAAAGGATTTTGACAGCAAGGATTTGGACACAGTCATGGCATCATGACTTCTCTTCAGATATAAGCAAACATGAAGCAAAAGAGTTTAGTATACCAAGGCCTTTATTCAGAATGATCAAATCTTACTCAAGTTACAGATTTGGAAAGGTTCTATACTTTAGTCTAAAACCTCGTTCTCTAAGTGGGGTTCATGAAGCACGGCCAGAGGGTCCACAATTTCTAAACTGTTACAGTTGGCACAACCCACCATTACTGATGTTACTATATTAGCCTTTTTGAACTAAATGGGTTTAACTCAAACTTTAATAACTCAACAAAAAGGAGGCCTATAAATGTTATTAGATTTCAACAGACAACTGAGTGTCAGGTTCAGAAACAAGCCGTCTCCAATAGCTGGCAAAATGTTACTGAACCTATTTAATTTGCCTAGTGTTTCAAcagttagattagatttatataAGAAATCTGTACTAATAAGAGggtctgtggatttttttttttttctttttaaaaaacagttacaGATGTCCACAGTTGCAAAATTCTTTTTAGAACCCCTAAACTACATAAGTATTGGTTTACTGGACTTACTCATCCATGTGCAGGGTCTTGTGGACTTGTATTTAGAGTTCTGGAGATCTATTCAGCAAGATCACCTCTTGCAAAAGTTTCTCAGTGAGCTTTAGGAAAGATGTGACTAAAATACTGCACTGGGATGATATTAGCTTAATATTGTTTGGTTGGTACACCCCTTCACAACCTTCTTGTTGGTTATATATCTCTTAACCACATTATAAGAGTCTCAGCCTGAGGTGCTGAAGAGGACACAAGCTTGAGATAAATCAATACTTACACCACGCAGTCTACCGGGGCAGATTCCACATGCGGACTTGGGAGCCTTGCCAGTCTTCTTGGTGTAGAGATACACGATCCGGTTACCAGGGGTCCGGGATCTGGCGGCGAAACGGAAATTATTGTTACTCAAATTCAGTATTAATGCTGATTTCATCACAGCAAAACTAACATATGCTCTACAGGACaacacagagtggtgtgatgctgtCATCACactgacgttgattattttcctacagcacaTTGGCTTGTACTACAGCTacaattcattaataaacactttGTGAATTGGGAATTCAACAAAGCAGTGGGATTAACATAATTCCCCAGTAACTACTCATccctgttctgtgttgcagaaGTACTGATGATACCCATGATGCTTTGAGAAACGTGTACTATGGTTACAGTATTTGTCACATCATCCAGACCTGACAAATGACCGAATTACTCAGTTAATGTCCATGTTTTGTCTTTAAGCTGGAAGCAGGCCATGAACACGTCCAGTGCTGTTATATTAGTGTATGTGCATGGCACAGTGCTACTCACAGTCTGGTCTTGTTGGAGGTGGTGTTGTAGGAAAGCCTACGGCGGTAAGTCAGACGCTGAACCATCTtgacctgaaaaacaaaaacacgaGCAAATTGATTAGAAGCGGCTTGTTGAAAAATAACGCTCAAGTTACACATTTCAGTTGCTGAACAGTCGCATATGATGTGAGACCCGTTAAACTTTAACAAATCATAATACTGCTTTCAGCATCTAATACTGAGTTACTCAATGACCATGTACGTCTACACCATTTACAAACATAGAAAATTAGTTGAATAATTACTGTAGAAAGCATATATCTATATAACAAGGGCCTTGAGTGACACCGGTTTTAGCAAACTAGCTCACATTTTCACTAGCACACAagcaaagcaaataaaaagcTTCTCGACATGAAACCCGAGCCAATAtcatacagatttatttctttacactGTAAATAACATATATACACTAAAACTATTTGCATGTGAAGCTCCAAAAGTGAGGATTACAAGCGATAAGTTTTACATTTCTTTCGCGAAAAGACGGAATCCGCCATACCTGGTATCACCGAAAC
>TU79644
ataatcccTAATTTATaagccaccgtcacctctggcttactcattagggataaattcacatatttacaatttattttggtttaatttaatttgaatctatttatttctctaaagctgctttgtgacaatgtccattttcaaaagcactatacaaataaaattgaattgattttaaaagaaaaaacaaacagtccATGCCTAATTTCACCTAAAAACGCCAGTCTTATCTTTTCAGatgaaaaaatactttattttgcATCTGTAATACAGAATTGATCCGCATTCCCTTTTAAtcaatgaaatatttcatacagTGGCCTACCCACTGTAATTTTGATGTAGATGTTTATCTAAAGGATGGGTTTAGCGACGCTGAGTTCAGGCAGTtatctgtgtagagtttcattgcatgctctccccatgtctgtgtgggtttcctgctggttctccggtttccttccacctcccaaaaacaagcaAGTAGgataaattgtccctaggtgtgaatgaatgtgtgaatatgtgtgtgtgtgtgcacatgatgccctgatcaggataaagcagttatagAAAGTGACTGAGAATGAAAGTTTATCTAAATGGGCTGTCTATACCtggaatgttagtgtgtgtgtacaaaaataaaagctaaaagcaACCTTTGGCCAACATTCCTTGTCAGTCATAAAAGAATGTTGGTGGACTTTTTAAGAACGTTATGAAATGGTTCCcaaaaaaacaaccaacaacTAACATTACggaaatgtttgtgtgtttgctgttcaCTTATTCCAATTctggcaattaaaaaaaactaatttaaatgCACAAACTATGGACTGTAACCAGAGGTAGGCATAGAAAAACATGAAACCTACAAAACAGAATATTTTCCACAGCACTactttcagcttttattcatttcagttacACTTTACTATTACTAATCTACTAAGTGTAACCTTTCATACTTGATCTGTAAATTAGGGTCAAGGACAACACACCGACTGCTGCCACACTTCATTTTATTCAGTGGTTTTATTTGAACAAATCTAGGGAGCATAATGCCCTTTAAAGTATACTGCTTTTCAGTATTTGTTCAAAATGACTCTACCAAGTGTAGTCATGGGCAGTCTACCTCAGAAGTGCACTGAATAAGCTTCACTTCAGATGTTTTGCTTGTTTCAGCAAAAAAGTTCCAATTAAAGTCTACAGTTTATATTTGGTTCATTTGTAAATTcataaCAGGACACAAACAAGTGTGTTccgaaacatttattttaaagtacaaACACTCATTTACTTAGATTTCTGACTCTGTGCCTGTGCCTTGAGTACTTTGACAACGATCTTCTGCTCCTCAATAAGGAAAGCACGCTTGATCCTTGTCACGCACACATTTGGCGCACATGGAACCACCATAAGCTCTGCTCACATGCTTTTTGGTCTTTGAGAGCCTCATGAGAACCTGAGGTCTCACTGCACGGATACCACGCAGTCTACCGGGGCAGATTCCACATGCGGACTTGGGAGCCTTGCCAGTCTTCTTGGTGTAGAGATACACGATCCGGTTACCAGGGGTCCGGGATAGTCTGGTCTTGTTGGAGGTGGTGTTGTAGGAAAGCCTACGGCGGTAAGTCAGACGCTGAACCATCTtgacCTGGTATCACCGAAAC

Function

symbol description
rpl34 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in cytosol; endoplasmic reticulum; and ribosome. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL34 (ribosomal protein L34).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79640 True 5525 lncRNA 0.37 2 19345844 19351904
TU79644 False 1676 lncRNA 0.38 6 19345844 19351904

Neighbor

gene id symbol gene type direction distance location
etnppl etnppl coding upstream 7137 19328031 ~ 19338707 (+)
LOC113540597 col25a1,LOC102793499 coding upstream 18467 19170699 ~ 19327377 (+)
ppp1r15a NA coding upstream 391844 18951047 ~ 18954000 (+)
sod3a NA coding upstream 494264 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 915485 18426358 ~ 18430359 (+)
trmt44 trmt44,LOC107710993 coding downstream 2476 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 36701 19388605 ~ 19393118 (+)
LOC113540663 cpz coding downstream 42251 19394155 ~ 19407627 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding downstream 103122 19455026 ~ 19470962 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding downstream 129151 19481055 ~ 19485146 (+)
LOC113540244 NA non-coding upstream 223220 19120838 ~ 19122624 (+)
G66887 NA non-coding upstream 434447 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 435356 18909646 ~ 18910488 (+)
G66865 NA non-coding upstream 482427 18859042 ~ 18863417 (+)
G66855 NA non-coding upstream 512017 18828179 ~ 18833827 (+)
G67208 NA non-coding downstream 21652 19373556 ~ 19375720 (+)
G67209 NA non-coding downstream 30649 19382553 ~ 19451392 (+)
G67227 LOC108267906 non-coding downstream 122591 19474495 ~ 19475474 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding downstream 147305 19499209 ~ 19501228 (+)
G67262 NA non-coding downstream 192142 19544046 ~ 19641619 (+)
G66864 NA other upstream 487192 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1137280 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1202213 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1334882 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1725765 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 638780 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 795891 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1668354 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1962314 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2277172 21629076 ~ 21640157 (+)

Expression


Co-expression Network