G69128


Basic Information

Item Value
gene id G69128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22409603 ~ 22452697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82001
GAAAAGGCTgaaaattttgatttaaaaaaaaaaaaaaaaatagagtaaaTACGTCTACAGCAAAGTGATATATTCAtcactttacaaataaatttaaatggtAGTGATTAGGAAGTGATTTTGAAATcgctgtttgttttcttttgctgtcCTGCAGCGGTCAGCACGGACACGTTCTAACATTCTGAGCAGCAGTTCAGCAGTGAAAATATCAGCCATGTGGAAACATTTCACCGTTTCTATGAGGGACATTAGACAAGTGATTTGTAAAGGAATTGTTTTTTTGtgttgttgttgtttatttaggtAAATGTTTGTCATCCTGTTTAGTCTCGTAATAAATGTGGATCCCAACAGGGGTAAATCGTGAATGAGCctagattttatttaatcaagatagttttaataaaatgtccTTGGCATGTGTCAGTGAAAACCTGACTTCTTGCATGCGTTTTGCTGGGTGTCCACATCAGTTGGATCAATATGAGACTCAATATCCTGTCCCAACATTCATGGCTTCCTTTCCTTGATTCCATAAATTCCTGGGAGATCATTTTCTAGTTGAAGGTGATAGCTAATTTAATGCATTCATTACTGCCTCATAAATAGCATCTACAGATTCCTGACACGTATGTGGTCACTGGTTGCAAATTAGCAtgtattgacttttttttcctcaagaaGTTTCATGATATAGTGCAATGCAAATGGTTAACTTTGGGTTTCCCAGTTTTCTGTTCACTAACATGCACAATTTGGCTTAGAGGTCACATGAGAGTAAGGAAAGGAAACCATTCTGAATGTTTGGATTGGATTGTCTGCCACTGTGACTGCTGCAGTGTACACTTTTCACCGAGCTGTCACTCCCTctagataaaaaaaacttactatTTCAGAACCACTGATCTACAGTCTACAgtcagactttcagctttaattcaaggggtttaacaaaaatattgcattaaccatttaggaattacatccaatggagtccctccattttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82001 True 1011 lncRNA 0.36 2 22409603 22452697

Neighbor

gene id symbol gene type direction distance location
rgs9bp LOC108268154,LOC103039154 coding downstream 48450 22358195 ~ 22361153 (-)
mcur1 LOC108268156,LOC108440645 coding downstream 55026 22345935 ~ 22354577 (-)
dph2 dph2,LOC105920302 coding downstream 63952 22338753 ~ 22345651 (-)
garem garem1 coding downstream 82795 22317465 ~ 22326808 (-)
chpf2 chpf2,LOC107724403,LOC107684493 coding downstream 157219 22245230 ~ 22252384 (-)
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding upstream 17522 22470219 ~ 22482144 (-)
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding upstream 93261 22545958 ~ 22627023 (-)
LOC113540005 NA coding upstream 200916 22653613 ~ 22662482 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding upstream 226492 22679189 ~ 22701151 (-)
emilin2a LOC108268130 coding upstream 385330 22838027 ~ 22851158 (-)
G69124 NA non-coding downstream 30070 22379295 ~ 22379533 (-)
G68923 NA non-coding downstream 220840 22188183 ~ 22188763 (-)
G68907 NA non-coding downstream 235629 22170080 ~ 22173974 (-)
G68758 NA non-coding downstream 463366 21945612 ~ 21946237 (-)
G68752 NA non-coding downstream 562875 21846385 ~ 21846728 (-)
G69131 NA non-coding upstream 525 22453222 ~ 22459488 (-)
G69139 NA non-coding upstream 53093 22505790 ~ 22512310 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding upstream 63007 22515704 ~ 22519266 (-)
G69183 NA non-coding upstream 197242 22649939 ~ 22652446 (-)
G69203 NA non-coding upstream 224679 22677376 ~ 22677918 (-)
G68760 NA other downstream 474434 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1038593 21354619 ~ 21371010 (-)
G68462 NA other downstream 1080353 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1095706 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 1584083 20778538 ~ 20825520 (-)
LOC113540019 LOC108268143 other upstream 176918 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 839351 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 878319 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1027268 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 1040682 23493379 ~ 23493919 (-)

Expression


Co-expression Network