G69136 (march6,LOC107664076,LOC107732575)


Basic Information

Item Value
gene id G69136
gene name march6,LOC107664076,LOC107732575
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22515704 ~ 22519266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82009
CGAAGATGAGCTGAACATGGTGGATCCCGCATAGCACAAGGTATACAAACATTACCTATACATAAGCAGCATGAAAATATTACTGtgagttaataaataaaaaatgaactgGACTCATCATAAAGTTTAAGATAATGTAATGATTTGCTTCATTGTGATATCCTTTGGTTAAGAAAGAGACCATTTTTAACTTCCAGGATTTATACAATACAAACACGCAGTGTAGCACTACTGTTGGTGTCTGCTCTGCCTGTAGCAGcattaaattatattcattCACTCAAGTTCAGTAAACTGGAGGCATAAGGCAGGAATGAGTACACCCTGGGTGGGACGCCAACACACAGCAGGGCATCACAGATGttcattcacacataggggcaatttagcatagacaATCCATCTACTGGAATGTTTATagaaggtggaaggaaaccataGATCCCAGAGGAAGCCTGCAGCTGTGAGGTCAGGTGGCAATTCTACCTCGCTGTGTCACTGTGCCACCCTATTAAATTAGATGCTCATTTATTAGGTACACCAATAAGGTAGGCACCCCTAATGTTTTGTACACTCTGTGCATGTATTTGCAAATGTCTTGTAAGTTACTGGGTTTACACTGGAATGCTacacagattattttaaaataatctgctCACCTGGCAAAGTGAGACACACCAAGCTGGCCAAGAGCAGCGTCACACACATGAAAAGGATCAGCAGCACAATCTACAGTAAGAAAGACCAACATACATTACAAGTCACACAAacttttaaaactattaaactTAGAATATAACTTAATATAGATAATGATCAGAGGACATTACCCTGAGGGGGAACTTCACAGGGCGGTGGTAGGGCTGGAAGCCCACAGGGCCTCCTTGTTGCAGGATGGCCTGGTGTGCCGCATGTAGGCCTTCGCCCACTACAGGAATGGCATTAGCATTGTTTCGTGGTtgctggttgttgttgttgttggctgCCTGGTTGGCGTTGTTGTCATTCTCCTCCTGGTCTCCCAGAAGATACGAATGTAGGTCTCtaaataacagaataacagaaacatggtatttttcctttttatgcTCAGTGGCTAGCATCTGAATATTAAGTTGTCTATAATCCTACATTGTCAGAGACAAACACTGacgttttttcatttttacttccACACAGGTTCCTCACAGAATGCTTCACTTATATGTAGctagattttacatttcttgTGCTACATTTGAGATTCAGTAACAGGAAAGGCGTAACATCTGCTGTAGAGACAATGTGGTCAGGTATAACTGTGGAAAGCATGCATTAATTTCTAATGGCTAAGACAGAGTCTAATTTGtgcttttgttgtgttttaatatCTACTGACAAGGTTTGCGTTAAGAGTCAGGCTTGGCTTTGTTTACTACAGCCCAACAAACTCACTGTGTCTCATGCTTAAGAGGAGTGCTGTGAGGGAGACAAGTGACAGTACCAAACTgttgatttacattttaacaggaaaaaaaagtgtagctctggggttttttttatttcataagaGACCAAAGAAACTCTCATTTTGAGTCATACTCTACTAAGCAATCAGGTGGTTATATAACAAGTTCGTTAATCAACTACTCATGCCCATCACTAatttgagaatttaaaaagtgtttgaatgtgtttatgagactcacagTAAGTAGCCAGCGGTGACTGTCCAGGCTCTCACCAAACCCTTCAGCCACTGCCGTGTGTGTCCCTGCTCCAACAGAGCCGGCAAAACCACCTGCAGCAACAGGAGCTCTAGGGACAGCTCACTCACTGGAGCATCACTGAGAGCATCACGTTGTAGGGAAGGAAGGCTGGCAAGATGTGTTTAATTATCCGAATGGGTAACCAGAGCATCAACAGGACTATCGACCCAAACACAACCTAAAAGACAtgacaaatgaaaatgtgtttgcTTAAAGAACAGGGATGAAAATTATGTATGTAATTACATATTTAAGGTAGCTCTGGACAtctcattttaaaacttttacaaATAATCCATTCATCTCTTCTGcttttacaaacaaacaatctaTTCTATTATTACAATGACTAACATTATGATGAAGTTATTGACATTTACATGTAACAGACAGTACTCAAAGCTACTGTACACTTGGTAACATTAGAAAACAGCTAGCCAGATTAACAACCTGGACAACTGGCTCGTATGTGACACACATAGAAACAACCACGATTTTGAACTATCTAAGTCTCTATTAGCATATTTACATTCTTGGCAATTTATAGAAGTGTTGTTGAACTGTTCAAATATACCATAAAATTGTATAGAATTTAATGACAAACAGTGGTTTAGCACGTATGTTCTATACctaaacatttctgaaatttctcACCACATCATACAATAATAATTTGCACATATGGTATTATTATGGTTAAgcttattttttatgtaatgcctctcaaataatatttatatggaAGTACTGAGAAAGTCCGTTATGAATAGAAAAATTTTAACTTGGTACTGTAGTAACAAATTTGATCCAGACACAGTGCCTGGGTACACTATTatattgaatttaaatattacacaaataacTATTTACTAGTAAAGCACAGATGCTCTTACCACTGATAGTATGAATCGTCTCAGATGTCTGTATATCGGAAGGTGGATCATTTCTTGGACTGGGTTAAAATCTGGATCATTAAGGTTTCTGAGAAACCACAAGACTCCAGGCCTGAACCTCTCGGAGCAGGAGGATAAAGGATGCAAAGTAGAAGACGTAGACCATGCCTACAAGCCAGTGCAGAAACATGGTGGTGCCTGGAGCCGACTCAAAACTTAGTTCTCTGTCCTTTAGGGATGCGTCAAACATTtcctataaaataataattatcagAAGTAATACTGTctgattttaaaacataataagaATATGGAGCGCTTGGCTCAAACAAATTCACAAACCAGAGAGCAGA

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82009 True 2994 lncRNA 0.39 3 22515704 22519266

Neighbor

gene id symbol gene type direction distance location
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding downstream 33560 22470219 ~ 22482144 (-)
scrib scrib coding downstream 47660 22377687 ~ 22468044 (-)
rgs9bp LOC108268154,LOC103039154 coding downstream 154551 22358195 ~ 22361153 (-)
mcur1 LOC108268156,LOC108440645 coding downstream 161127 22345935 ~ 22354577 (-)
dph2 dph2,LOC105920302 coding downstream 170053 22338753 ~ 22345651 (-)
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding upstream 26692 22545958 ~ 22627023 (-)
LOC113540005 NA coding upstream 134347 22653613 ~ 22662482 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding upstream 159923 22679189 ~ 22701151 (-)
emilin2a LOC108268130 coding upstream 318761 22838027 ~ 22851158 (-)
adcyap1b LOC100304507 coding upstream 467395 22986661 ~ 22990616 (-)
G69139 NA non-coding downstream 3394 22505790 ~ 22512310 (-)
G69131 NA non-coding downstream 56216 22453222 ~ 22459488 (-)
G69128 NA non-coding downstream 63007 22409603 ~ 22452697 (-)
G69124 NA non-coding downstream 136171 22379295 ~ 22379533 (-)
G68923 NA non-coding downstream 326941 22188183 ~ 22188763 (-)
G69183 NA non-coding upstream 130673 22649939 ~ 22652446 (-)
G69203 NA non-coding upstream 158110 22677376 ~ 22677918 (-)
G69233 NA non-coding upstream 252120 22771386 ~ 22772012 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding upstream 284120 22803386 ~ 22805908 (-)
G69254 NA non-coding upstream 289640 22808906 ~ 22809249 (-)
G68760 NA other downstream 580535 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1144694 21354619 ~ 21371010 (-)
G68462 NA other downstream 1186454 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1201807 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 1690184 20778538 ~ 20825520 (-)
LOC113540019 LOC108268143 other upstream 110349 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 772782 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 811750 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 960699 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 974113 23493379 ~ 23493919 (-)

Expression


Co-expression Network