G69139


Basic Information

Item Value
gene id G69139
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22505790 ~ 22512310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82012
GGCTGCCCTGCTGCGTTGGCAGGTTGCTGTTGGTTCTGCTCCAACCACAGTGGAGCTCCACCATGAACAATCTGCTCCCGTAACCACACCAGGCTTATAAAGGCGCAGAGGGTGCAGGTCACCACGAAGCAGCCCTGCAGACAGTCCGCCAGCAGGTTCTCCCTACACACACGTTCAGTCAAACATAAATGTGACACCAGTGAGAAACTTCAGTATATACACAGAATAAGATTTGGATTTCCTTCCTCCAAAAACCTATACTAGTAGAATAGTTCTTATGGTTTGTTTTTGCAACACctgtttttacatttcattatttaatattcttCTTGTGAATCTTGTGAGTTACTTCTTAACATCTTTGGCAAAATTTACCTCCACAGTTTCCCTGTACACTGGTACTTACGTGGAAAGCATATCTAATGGCAGCGTCAGGAGGGAGCTTACAGAACCAGTAAACAGACACTTATAGATTCGACCTATCAGAGGACAGAAATAGCTATTCATTCATCATATAATAGTGATATAAAAGACTTCTGAAACTAGACATACAGGCTGAATTCTCTGTAACGTCTAAAACACTTACATGCTGTTAAAGGTACAACTCCCAGCCAGGCAAAGGCCACCAGCGTATAATGGAACCAGTATCGGATGGCAGTGCCTATACTGGTCACCAGACCTGCAAAAATGTCCTGTACTGGAAGCCGTGAAGGCATGTCTGGAGAGTAATTGGCGTGAAAGCAAATCTGTGCTTGCATAATTCGCAATACTCTTTTCTGCTGTGTTTCAGCCACTGCACCAAGCTGGGAAAACACAGGAAAGGAACAGGACACAGAGTGAGAGTGCACATATGGAATAAAGCAGACGCTTCCTGCCTTTTTTTCTACATGGCACGACCATGCGACCAGCATTCCAGGCTCGTTCGGTATTGCTGCAAACAGAGCTGATGGCACAGCCGGAATATTTTATGGACTGCTTCAGTTTCGGTCATTAAAAAGTGATCGTAAATTACACTAATGCGCCTGGAGAAACATTCCGCAGAGTAAGACAAAAAGTACACAGAAAGAATAGAATGCACAATAAACATAAATTTGTTAAATGATACCACTGAAAGCTGGTGCTTGATGAAAtctaggagaaaaaaaaaatgatatgagCAATAATAGTTGACATTTTCACTGGGAATAAAAGCTAAAGCTGGAAAAGAGGACATTCCATGTGTTCATGAAAGCACATAATAATCGACATCTCTTTTTGCATACACTCTGCTAATTTCCAAATCTTCGTCAGTGAGTGCTGATTAGGATCGTATTGTTGCACTTCAGAGATCATAACACCCTGTGTGTCATCACAACCTGTTTAGCATTTCATCCTGCCCCATTACTGAGTCAGACTCATGCCAAATACCAAGAAATACCGATCCCATCGTCACACCACCGGCTGCCTCAGTAAACCGAGTCGCACTAATTAGCTATAACcttaattcattttcactgtACTTGCCACAAAGGAGGACAAAATGGCTGCATTACTGTATAATTGGTGTTACCTAATCAGTAAGAATATACACTGAAAGCACTGGGACAGTGAGGTCAAAACGTTTTGCACTCTGTCACAAAGTTAGGGTTTAACgataaacaaaaaggaaaaaattaaCAATTACTTTGTATCTGATTTCCgtgtttcatattttaatgtaacagcAGTTTCTATGTTCTACCTCCCAGATCTTAGTCTAAAGACCAAAAGGTTAAGCTGAGGGTTATCCGAGTTCTCCAGGCAAAATACACATGCTCAGTTATACATGAACTGTTCAGTTTGGCAGTCGAAATCTTCCCTATTTTCCCCCCGCTAGTGATGCATTCTGGGTCACAGTATTGTTACATGCTGAAGCAGAACCCAACGACCCTGCAGCCATTTGCTAGTAAATAATCAAACGATATAACTCGAAACATTTTGAAAGTCATTGTACTATGGCCACCtttgttacagcagcaataaAGATCAGTCAGTGAGCCAGCTCCAAAAACACTAACGCCTGCCAAAGCCATTAGACCAATTTACAATGTTCCATTGTAGTGTggcatttatgtatttattggaTTGTCAAAAACTTATCTGTTATCTATATCTGTTATCTATATCTGTTATCTATATTTCCTTTGCTTTCCTTTTTGTGATATTCACCACCATCTCATTTAAAACCACAGAACTTTTTTTCATTGGtgtacaaaatacacaataGCAGTTTTTAGCCTGTTGTAATTCGGCCATTGTATATACACGCAGCcgttatatatataaaatatttcaaacgATTAATTTTGCTAAAGATCATACTACACCACTAAACTGAGGTGACggctgtgtgtgtaaaaaccaCCAGCAGCCTTCAAAGTGCTTTAATTCACTTCAAGTTAGAATCTGTGCCGAGGTTCTTTAGCACCTAAATTTGGGTGAGTGGAGACAAAATCATGAAACACATCACAGTGAAACTGAGCACTTATGTCTAacccttatacacacacataaaaactcTACTTCACAAGTGCTACATTTAAAGCTTTCATAATCAGTTTGAATGTGAACCCTTTTTACAGGTGTATTCTCCGTATAAATGAAGAATACTTATTTAAAACACAGGTGAAGTCCAAACTGATGCAGGAATTCAAAGCCAAATAATCAGTAAAGGGTTAGTTTTGAACGCAAGGCACAGCTGAAATCCCAGGAAATTCCTCTGTGTGAACAGAATATGTGCCAACACCATCCGAGACGGCCGATTTAAACCATGCAAAGTGAGGTAACAGGAAAAACAACCTCGagtcaacaaagaaaaaagaacaggaGAAATTTCTACACAGTGCATTTCAATAGTTAAATGATTGTCAACCATTTGTGATCGGAACAAAGCGAATCACAGTTCGGGATGTGTCAGTTATGAGTGTATCACCTGAGGCGtaaccagagagagaggagactaATAAACATGCTCAAGCGTTTGAACCATAAATATCGCCATATCCATTTATTTGTTATGTGGCACGTCCTGTGTTATGGGACCTGGATAACAAACGCATGCATGTATGTATTCTGGGAAAATACCAGACTGCAGGTCCACAGAATGCAAAACCTGAACGTTATCAGTACATGAATGCAAATAACGTCCCAGGTTTTGAGTGCGAAACCATTTCAGGTGTCAAGTTCACAAAGACACTTTGCGGACAGAGAATAAGGACTAGCATTATCATGTGTCCTGAAAACTGAAAGCATGagtttaaaaagcacaacaaTGAGCTTGCAAATTCTTCAACACTTAAACCTTAAAACCTAAACTCACAGTACTTACCATTCTTGGTGAATGAATTTAATACTTCCAGTGCAGACACAAGGATGGTAGAGGGGTTTGTCCTGAGTTCCCTCAGAGCGACACACTCGACATATATCAGCTGCAGACCAGATCAGAACAAGCAATtaaacagcagcagaaaaaCTAGCACTAACTAACAGAAATTTAACACTTCTGCtcgtcttttttttaatcacagatgATCTTTTGTTAGTTGTTAAATATGACTGATTGTGGAAATGGAGGCTGTGTTTACAGcttagtgcttttttttttctagaataaTATGTTAATGCAAGACGTTAAATTAGCTCATGCGTCGTCAGACTCTTTGCAGGTTGCATTTGATGCACAATTCTGATCATTTGtgacaaatcagatttttttttttgtcctgactGTTCACATATGCACAAGACCTGAATAAAGATCCGATTTTTACATCATTCCCTCTGTAACAATGCACTAAGCTGAAAACAGCAACTTATTACCAGGTGCATCACTTTGGTTGTAGAAAGGACAAGTGATcatattgttttcatttttgcatcTTTGTATTTTGCATTAAGGTCTTTAATTTTGAAGAATTGGAGCAAGGACCAACTATAGCTTTTCTCTTCCATAGCCTGAGAAATTCAGttccagtttttgttttttttttagtatggtTGTACTTCCCTACAGATTGCTAAGGCAGTTTTTCACCCGACCTCCACGGTTGCTGACGTGTGTCAATTTAGTGCTGAATGAATTTTGTCCTAGCCTATCATCACATAACAATGATGATAACGTCAGAATTAACGGGAAATTTGGATGTGAGCGTTTAGACATAATACGAGTCTCATAAACAGATATCAGTGAAGTTTCAGACATATCACATGTCAGTGTGACAAACCccgatctgatctgatctgatcacacacatgcaacaaCTGTAGGCAGTGTAAATACTGCTCTACATGTATGAAAGAAACACTGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82012 True 4327 lncRNA 0.39 2 22505790 22512310

Neighbor

gene id symbol gene type direction distance location
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding downstream 23646 22470219 ~ 22482144 (-)
scrib scrib coding downstream 37746 22377687 ~ 22468044 (-)
rgs9bp LOC108268154,LOC103039154 coding downstream 144637 22358195 ~ 22361153 (-)
mcur1 LOC108268156,LOC108440645 coding downstream 151213 22345935 ~ 22354577 (-)
dph2 dph2,LOC105920302 coding downstream 160139 22338753 ~ 22345651 (-)
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding upstream 33648 22545958 ~ 22627023 (-)
LOC113540005 NA coding upstream 141303 22653613 ~ 22662482 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding upstream 166879 22679189 ~ 22701151 (-)
emilin2a LOC108268130 coding upstream 325717 22838027 ~ 22851158 (-)
adcyap1b LOC100304507 coding upstream 474351 22986661 ~ 22990616 (-)
G69131 NA non-coding downstream 46302 22453222 ~ 22459488 (-)
G69128 NA non-coding downstream 53093 22409603 ~ 22452697 (-)
G69124 NA non-coding downstream 126257 22379295 ~ 22379533 (-)
G68923 NA non-coding downstream 317027 22188183 ~ 22188763 (-)
G68907 NA non-coding downstream 331816 22170080 ~ 22173974 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding upstream 3394 22515704 ~ 22519266 (-)
G69183 NA non-coding upstream 137629 22649939 ~ 22652446 (-)
G69203 NA non-coding upstream 165066 22677376 ~ 22677918 (-)
G69233 NA non-coding upstream 259076 22771386 ~ 22772012 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding upstream 291076 22803386 ~ 22805908 (-)
G68760 NA other downstream 570621 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1134780 21354619 ~ 21371010 (-)
G68462 NA other downstream 1176540 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1191893 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 1680270 20778538 ~ 20825520 (-)
LOC113540019 LOC108268143 other upstream 117305 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 779738 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 818706 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 967655 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 981069 23493379 ~ 23493919 (-)

Expression


Co-expression Network