G69183


Basic Information

Item Value
gene id G69183
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22649939 ~ 22652446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82062
tctgTATTTATTCTCATATTCAAACAAGCTACTGGGATGTGATCATTTGTTGTATTAATGGTAGGACAGGCAAATAAACAGACTATAAGTATatgtaaaaagttttttataCAATACAAGCCACGCAAATACAGTTtgtagagagtgtgtggcaCATTcttgcaaagaaaaaacaagaatttgtaaatactttaatttacatacatacaagaaaaaaataaaacctatgCAAGGCACAAGTCCAGCAGTTCAGTCTCCAGTGCACAGTTTAACCACCAACAATGATGTTGTTAATGGGGATGTGGATGAGCTTGACGAAGAACCCAATGAAGCCCATGATTGCAAAACCAATCGCTGTGGCCATGGCAATCTTCTGAAACCTTTCCTGTCAGGTTTTGTGCATCTCTTCACCAGTCTGATGGAGTCCTTCACAAACTGCCGTCCTGGCTCCACGAACTGCATTACCTGATCCATCACAACGGTCTGACTTCGTGAAGCTGTCCAAAGCCGAATGAACTACACTTGCTAGCACTGGCTCTGATACACGCAGCTCCTAAAGATACACGTAGAGCTATGGCGAAATGATGACGTTGCCTATTACTCGCG
>TU82063
TTGATCTCTGCAAGAGTTACTTATAGTATTCTATAGTACTTGTAGTATTATAGTATTAAACAAACCCTGAGTGAAATGCGTGATGTGATTAAACTGCATGTTGTTACCTTTCCTGTCAGGTTTTGTGCATCTCTTCACCAGTCTGATGGAGTCCTTCACAAACTGCCGTCCTGGCTCCACGAACTGCATTACCTGATCCATCACAACGGTCTGACTGAAGAATAACAAGACCTTCGTGAAGCTGTCCAAAGCCGAATGAACTACACTTGCTAGCACTGGCTCTGATACACGCAGCTCCTAAAGATACACGTAGAGCTATGGCGAAATGATGACGTTGCCTATTACTCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82062 True 606 lncRNA 0.41 4 22649939 22652446
TU82063 False 350 lncRNA 0.43 2 22649939 22650544

Neighbor

gene id symbol gene type direction distance location
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding downstream 22916 22545958 ~ 22627023 (-)
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding downstream 167795 22470219 ~ 22482144 (-)
scrib scrib coding downstream 181895 22377687 ~ 22468044 (-)
rgs9bp LOC108268154,LOC103039154 coding downstream 288786 22358195 ~ 22361153 (-)
mcur1 LOC108268156,LOC108440645 coding downstream 295362 22345935 ~ 22354577 (-)
LOC113540005 NA coding upstream 1167 22653613 ~ 22662482 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding upstream 26743 22679189 ~ 22701151 (-)
emilin2a LOC108268130 coding upstream 185581 22838027 ~ 22851158 (-)
adcyap1b LOC100304507 coding upstream 334215 22986661 ~ 22990616 (-)
clul1 clul1 coding upstream 388662 23041108 ~ 23050113 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding downstream 130673 22515704 ~ 22519266 (-)
G69139 NA non-coding downstream 137629 22505790 ~ 22512310 (-)
G69131 NA non-coding downstream 190451 22453222 ~ 22459488 (-)
G69128 NA non-coding downstream 197242 22409603 ~ 22452697 (-)
G69124 NA non-coding downstream 270406 22379295 ~ 22379533 (-)
G69203 NA non-coding upstream 24930 22677376 ~ 22677918 (-)
G69233 NA non-coding upstream 118940 22771386 ~ 22772012 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding upstream 150940 22803386 ~ 22805908 (-)
G69254 NA non-coding upstream 156460 22808906 ~ 22809249 (-)
G69320 NA non-coding upstream 402068 23054514 ~ 23055383 (-)
LOC113540019 LOC108268143 other downstream 13851 22629615 ~ 22636088 (-)
G68760 NA other downstream 714770 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1278929 21354619 ~ 21371010 (-)
G68462 NA other downstream 1320689 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1336042 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 639602 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 678570 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 827519 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 840933 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 842589 23495035 ~ 23495897 (-)

Expression


Co-expression Network