G69248 (LOC108268132,LOC108440660,LOC107664077,LOC107746915)


Basic Information

Item Value
gene id G69248
gene name LOC108268132,LOC108440660,LOC107664077,LOC107746915
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22803386 ~ 22805908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82140
tgcattgcaagGCTTTATTTGTGGTCGTCACATAACAGTCTTTTGGTTTCTATCATTAAGACATATGCATGGTGACATTAGACCATCAATATGTCAGACAGATATAAACAGACAGACTATAACCTTGAAAGCCTTTTGCTTCACACAGACTGCCATAGAATTGAAGCACATCCATATAGTACTAGTGTAACGTAAAATCCAGCTACAGAGCTACAAGATATTACACTACGACAATGTGCTGGctttcttatttaataatttcCAAGAGTTTCCCTTTTAGTACTATTATGATGAATACATTTAAGCAAAAAGAGTTAATTCTCCTAGCTGAGCTGTTTCTCAAGATTACTGTATCTTCAATCATAAATGGATGACCTGTAGGTAACATTTCAgttaaaacaggaaataatatggacacaaataatacaaacagaaataaaatattaaaacagtaaaGGCACGTGCTAGATTTATGTATGAATATGGCAACGTTTAAAGCATTTCATTTCCAACTATGTTCACCTTTTCAAACGGTTTTCTCAGGAATCCAGGGTAAGCGGCTGATTAAAGCTGAGTACTGAATGTGCCATGTAAGTGTTTTAGATCTGGTGCTAATCTAGATTACCACACTGAGCATGATTGATATGTTTGCCTTTCACAAACAGttgttcattattaatgttaattgttAATGAGGTGTTAATTATTACTACTAATTGGCCAGGAGCtttaatgtgtctgtgtgtttatgacgTACGGAGGTTGCACACGCTTTGGAGTAAAATGCTGTAGGATGCACACTGGTCATATCACGGCCCCTGTGTTCTCCTGCAGCTCCCGTATTTCTCTTCTACTCTTTCTTCTCAGCATCGTCCTCTGGTATGTAGACGCTGACGGTGAACTCGCCAGCCTCTGTGCCGTACTTGTTCTTCACCAGCAGGGCGTACTTGCCTGAGTCAGTCGAACTGACTGCCGCGATGGTGATGCTGGCAAACTTGCCGTGCTCAAACTTGAGCATGATGTGATCATCAGGTAGCAGCTCTTTGTCATTCTTCAGCCAGCTGACTTCAGGCACAGGGTCGCCCCACACATTGCCGGTAAGGTTCAAAGCTTGCCCTCCTGGATAGTGACCACATCTGGCAGGCCTCCAATCACACGTGCTCGGTCTATGAGAAAAATGAAGCAGTCAGTAAGCCTCTTGGTAAATCAATGTGTACTCCGAAGGAATTTCTTACTCCTGACCCTACATGtctttatattttcaaaaacaagaagtgagGTTACAGCACAGACTGTAGGGTCTAAACATTCCCAAGACATTTAGACAGGAGATGCATCCCTTACTGCATCACTACTCTATATGCATCCTACGCAAGTTGGTAAGGAAGATAGCTTGAAATAGCATCCGCATGCTTTCAGAACAAGCTGTCTTCAGGAAAGAGCACAACAATGACAGCAGAGACAATCACTTACTTCTCTCTGCAATAGCGGCAGCCCTGAGGAAGGAAATGGATAAGCACACTGTTAGTGAAGGTTTTAAATAGCATCACAGCCTGTTAAGGTGATATGGTCTACTTCCACACAGCAGTGTCAGAAAAAGCCAGAGCCAATAACGTCATAAGGATGTACTCAgatgttattttctattttaggaCTTTAgtaggagttttttttttcttgtcgtTTGTTTGCATACAACAGTTTGTAAAAGTATACATTATTTGTGAATgatatctttaataaaatacaaaagtagGATACAGATAATTTATTATATCATAATTAAGTACTTACTTCAGCCTCTGGAACTCTGCATAGGCCTCTTCCCATGCtttaatagaatagaatagaatagaatagaatagaatagaaagtGTTGAATgagaaaggttaaaaaaaagtagactaataataaactccAGTCTAAAATTGACA

Function

NR:

description
PREDICTED: M-protein, striated muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82140 True 1935 lncRNA 0.39 2 22803386 22805908

Neighbor

gene id symbol gene type direction distance location
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding downstream 102235 22679189 ~ 22701151 (-)
LOC113540005 NA coding downstream 140904 22653613 ~ 22662482 (-)
ctnnd2b ctnnd2,ctnnd2b,LOC107746909,LOC107686039 coding downstream 176363 22545958 ~ 22627023 (-)
puf60b puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 coding downstream 321242 22470219 ~ 22482144 (-)
scrib scrib coding downstream 335342 22377687 ~ 22468044 (-)
emilin2a LOC108268130 coding upstream 32119 22838027 ~ 22851158 (-)
adcyap1b LOC100304507 coding upstream 180753 22986661 ~ 22990616 (-)
clul1 clul1 coding upstream 235200 23041108 ~ 23050113 (-)
mrc1b LOC108268341 coding upstream 344218 23150126 ~ 23174379 (-)
si:ch211-106h4.9 LOC108267629 coding upstream 424142 23230050 ~ 23263297 (-)
G69233 NA non-coding downstream 31374 22771386 ~ 22772012 (-)
G69203 NA non-coding downstream 125468 22677376 ~ 22677918 (-)
G69183 NA non-coding downstream 150940 22649939 ~ 22652446 (-)
G69136 march6,LOC107664076,LOC107732575 non-coding downstream 284120 22515704 ~ 22519266 (-)
G69139 NA non-coding downstream 291076 22505790 ~ 22512310 (-)
G69254 NA non-coding upstream 2998 22808906 ~ 22809249 (-)
G69320 NA non-coding upstream 248606 23054514 ~ 23055383 (-)
LOC117597081 NA non-coding upstream 466254 23272162 ~ 23273614 (-)
G69503 NA non-coding upstream 472667 23278575 ~ 23278782 (-)
G69551 NA non-coding upstream 590756 23396664 ~ 23397963 (-)
LOC113540019 LOC108268143 other downstream 167298 22629615 ~ 22636088 (-)
G68760 NA other downstream 868217 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1432376 21354619 ~ 21371010 (-)
G68462 NA other downstream 1474136 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1489489 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 486140 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 525108 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 674057 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 687471 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 689127 23495035 ~ 23495897 (-)

Expression


Co-expression Network