LOC113540115


Basic Information

Item Value
gene id LOC113540115
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23453233 ~ 23454221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82581
CAACTTTCAGGATAACACTGAAAACCCTCAACATCTTTCTGCAAACATTTTGCAGaaagacattttcttttaaagcatGATAGTGGCAGCAGCGTGATCTCGTGATACCCTGATCTAGTCTCTTCTATCAATAAACGGCACATTATGGAAAGCTGAACTGCTGGTGCAGTTTCAAGAGCTTCCTACACATCATACAATGGCTATGAATGTCTCACTGCAGTCATGTTTGTTGATGATTTTTCTAATCTGTGCAGcACACAGTGATGCACAGACTGCATCAGAAGATCGTAATGACTAAAACCGCCACTAAGCTTGCTAAGATACCAAGACGGAGCATTCAGCAACATACAGTCAGGCCCATATGACTgtatgggctccagacttcaggcagtcattgactgcaaaggattttcatccaagtattaaattatggttatatttacaattatgtcactttgtccaaatacctttgagcccctgaaaatggaagtactttgttgaaaatggctgtaatttctaaatggtaaatgtcatatttttgtggaacctcttcaaataaagctgaaagtctacactttga
>XR_003403997.2
CTGAAAACCCTCAACATCTTTCTGCAAACATTTTGCAGaaagacattttcttttaaagcatGATAGTGGCAGCAGCGTGATCTCGTGATACCCTGATCTAGTCTCTTCTATCAATAAACGGCACATTATGGAAAGCTGAACTGCTGGTGCAGTTTCAAGAGCTTCCTACACATCATACAATGGCTATGAATGTCTCACTGCAGTCATGTTTGTTGATGATTTTTCTAATCTGTGCAGcACACAGTGATGCACAGACTGCATCAGAAGATCGTAATGACTAAAACCGCCACTAAGCTTGCTAAGATACCAAGACGGAGCATTCAGCAACATACAGTCAGGCCCATATGACTgtatgggctccagacttcaggcagtcattgactgcaaaggattttcatccaagtattaaattatggttatatttacaattatgtcactttgtccaaatacctttga
>XR_004577997.1
CTGAAAACCCTCAACATCTTTCTGCAAACATTTTGCAGaaagacattttcttttaaagcatGATAGTGGCAGCAGCGTGATCTCGTGATACCCTGATCTAGTCTCTTCTATCAATAAACGGCACATTATGGAAAGCTGTTATTTATAGAAGGAAGAGCAAACGGTATAATGAGCTCCTCTTAACAATGTGCATCATGCATTCAGGAACTGCTGGTGCAGTTTCAAGAGCTTCCTACACATCATACAATGGCTATGAATGTCTCACTGCAGTCATGTTTGTTGATGATTTTTCTAATCTGTGCAGcACACAGTGATGCACAGACTGCATCAGAAGATCGTAATGACTAAAACCGCCACTAAGCTTGCTAAGATACCAAGACGGAGCATTCAGCAACATACAGTCAGGCCCATATGACTgtatgggctccagacttcaggcagtcattgactgcaaaggattttcatccaagtattaaattatggttatatttacaattatgtcactttgtccaaatacctttga

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU82581 True 580 lncRNA 0.39 3 23453233 23454221
XR_003403997.2 False 456 lncRNA 0.40 3 23453340 23454204
XR_004577997.1 False 523 lncRNA 0.40 3 23453340 23454204

Neighbor

gene id symbol gene type direction distance location
LOC117597115 NA coding downstream 10490 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 34343 23409414 ~ 23418890 (-)
nol7 NA coding downstream 70345 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 130622 23318535 ~ 23322611 (-)
e2f5 LOC108268108,LOC108437220 coding downstream 161235 23285036 ~ 23291998 (-)
LOC113540113 LOC108267226 coding upstream 12196 23466417 ~ 23505181 (-)
LOC113540016 NA coding upstream 83207 23537428 ~ 23544732 (-)
amph amph coding upstream 92949 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 304163 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 329877 23784098 ~ 23843304 (-)
G69551 NA non-coding downstream 55270 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 174451 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 179619 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 397850 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 643984 22808906 ~ 22809249 (-)
G69649 NA non-coding upstream 140110 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 196830 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 467885 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 477112 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 684072 24138293 ~ 24138492 (-)
retreg1 fam134b other downstream 106660 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 146299 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 817145 22629615 ~ 22636088 (-)
G68760 NA other downstream 1518064 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 2082223 21354619 ~ 21371010 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 25744 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 39158 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 40814 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 41736 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 59235 23513456 ~ 23514039 (-)

Expression


Co-expression Network