G69878 (abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809)



Basic Information


Item Value
gene id G69878
gene name abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23940241 ~ 23943072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU82909
GTTCCATTGAGTCCGATGAGGCCGTAGCGGCGACCCGAGTTGAGCTCCAGACAGGTATCGCTGAGCAGTTCCTGCCCGTGGAAAGTTAGCGAGAGACTGCTGATGTGCACATCTGTGCTGTTTGGATGAGATGCCAGCACCCCTGTAACAGCACGTGCCTCTGTCTTCTTCAGCTcaaactcatccagctccttAGTAAGACTGGCTACTCCATTGACCTCAGACACACCGTTTTCTTGGCTCTCTGGTTTCTCCCCCTCGCCGTTCACTTCTTCAGCTTTTTTGGGCCGCTGACGGGCCTTGGCTGCCTCCTTCTTCTTCGCTGCCTTCTTCTTGGCCAAATCGGACGGCATTGTGACCGGGGAACAGGAATAAAAGGTCCTGGGGACACAGCAAACTTTACTTCTCCCACTTGAGCGGTCCCGGTTCACTAACAGGAAACCAGCAGCCTCATGGCTTTTCGATACACGGCGTCGTAACAACGCGCGTGCTCAAGACCGGCTCGCCAGCCAATGGGATTTTAGGATTCGCAGACGCCCCGCCCCCTGGAGGCTGGCGCAAGAGCTGAATGGGGCGtcgctgttcttttttttttctcctcatgtGTTCCGCTTATCAGTTGTATTATGACTAATATGCTCATGAAACTATATTATGATTAATTTAGTCTCGAAATGTAAACTAGATTAGAACCTATATAATCACATAATCACAAACCATATTTACTCTCTGTGGGTGAGGAGTggaatgaaattaaacatgacTTCAA

Function


symbol description
abcf2a Predicted to enable ATP binding activity. Is expressed in neuromast. Orthologous to human ABCF2 (ATP binding cassette subfamily F member 2).
abcf2 Predicted to enable ATP binding activity. Located in membrane.

NR:

description
PREDICTED: ATP-binding cassette sub-family F member 2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU82909 True 769 lncRNA 0.50 3 23940241 23943072
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Neighbor


gene id symbol gene type direction distance location
mycb LOC108268289 coding upstream 289608 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 298772 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 332040 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 538511 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 549240 23387009 ~ 23391001 (+)
LOC113540051 NA coding downstream 70784 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 77993 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 178481 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 191604 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 202010 24145082 ~ 24148968 (+)
G69870 NA non-coding upstream 17545 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 82670 23855075 ~ 23857571 (+)
G69735 NA non-coding upstream 90727 23846645 ~ 23849514 (+)
G69722 NA non-coding upstream 165970 23758384 ~ 23774271 (+)
LOC117597085 NA non-coding upstream 172378 23654922 ~ 23767863 (+)
G69946 NA non-coding downstream 64631 24007703 ~ 24009860 (+)
G69966 NA non-coding downstream 140534 24083606 ~ 24084218 (+)
G69987 NA non-coding downstream 195563 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 623173 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 623928 24567000 ~ 24567318 (+)
G69509 LOC108267411 other upstream 619898 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1287794 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2177940 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2300084 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2616274 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 85034 24028106 ~ 24106223 (+)
G69971 NA other downstream 165723 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 915954 24859026 ~ 24871263 (+)
tnr tnr other downstream 1764755 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1953945 25897017 ~ 25902006 (+)

Expression


G69878(abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809) Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G69878(abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809) Expression in each Bioproject

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G69878(abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network