G69916


Basic Information

Item Value
gene id G69916
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23922106 ~ 23922538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82956
gtccagtttgggtgagcctgtgcccatgatagcctcagattcctgtttttggcagAGAggagtggtcttctgcttttgtagcacATCCACCTCCAGGTCTGATGTTCTGTGcattctgagctgcttttctgctcaccacggttgtaaagagtgattatatgagttaatACATCCTTCcagaaccaatctggccattttcgtctgacctttcttatcaacaaggcgtttccacccacagaactgtcactcactcactgttttttgtttttcacaccattctgtgtaaactctagagactggtgtgtatgaaattcccaggagatcagcagtttctgaaatactcaaccagCTCTCCTTGTACCAACATCCGTGCCACAaccaaagtcacagagatcacactttttcttcagtctgatgtttgatgtttgaaGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82956 True 433 lncRNA 0.44 1 23922106 23922538

Neighbor

gene id symbol gene type direction distance location
ttc19 ttc19 coding downstream 2800 23907159 ~ 23919306 (-)
slc4a2a slc4a2,LOC108413474 coding downstream 22199 23859872 ~ 23899907 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding downstream 63720 23845044 ~ 23858386 (-)
asap1a LOC108267580,LOC108437251 coding downstream 78802 23784098 ~ 23843304 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding downstream 139993 23758384 ~ 23782113 (-)
faim2a LOC108413298 coding upstream 2542 23925080 ~ 23935101 (-)
abcf2a abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971 coding upstream 12792 23935330 ~ 23942837 (-)
smarcd3a smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026 coding upstream 21315 23943853 ~ 23973123 (-)
tmub1 tmub1,LOC105023792,LOC106568619 coding upstream 52209 23974747 ~ 23982005 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 65266 23987804 ~ 24001864 (-)
G69691 NA non-coding downstream 270240 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 327562 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 467885 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 524143 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 643324 23278575 ~ 23278782 (-)
LOC117597086 NA non-coding upstream 8795 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 215755 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 223040 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 223352 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 256493 24179031 ~ 24179864 (-)
LOC117597117 NA other downstream 390090 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 404436 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 405747 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 407171 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 408067 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 381836 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 643203 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2449383 26371921 ~ 26376408 (-)
G71596 NA other upstream 2549542 26472080 ~ 26551030 (-)
G71832 NA other upstream 3174064 27096602 ~ 27100858 (-)

Expression


Co-expression Network